CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90477
KRG96686
KRH00638
KRH16959
KRH22265
KRH24392
KRH25797
KRH27067
KRH29374
KRH33767
KRH40543
KRH48234
KRH51475
KRH53667
KRH55721
KRH60786
KRH64261
KRH65140
KRH68409

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	KRH22265	AT1G06390.1	21798944
AT3G60200.1	KRH25797	AT1G06390.1	21798944
AT3G60200.1	KRH27067	AT1G06390.1	21798944
AT3G60200.1	KRH55721	AT1G06390.1	21798944
AT3G60200.1	KRH00638	AT4G00720.1	21798944
AT3G60200.1	KRH40543	AT4G00720.1	21798944
AT3G60200.1	KRH48234	AT4G00720.1	21798944
AT3G60200.1	KRH65140	AT4G00720.1	21798944
AT3G60200.1	KRH24392	AT4G39050.1	21798944
AT3G60200.1	KRH29374	AT4G39050.1	21798944
AT3G60200.1	KRH51475	AT4G39050.1	21798944
AT3G60200.1	KRH60786	AT4G39050.1	21798944
AT3G60200.1	KRH16959	AT5G24660.1	21798944
AT3G60200.1	KRH53667	AT5G24660.1	21798944
AT3G60200.1	KRH64261	AT5G24660.1	21798944
AT3G60200.1	KRG90477	AT5G26751.1	21798944
AT3G60200.1	KRG96686	AT5G26751.1	21798944
AT3G60200.1	KRH33767	AT5G26751.1	21798944
AT3G60200.1	KRH68409	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66386	Soybean	mitochondrion	19.93	78.57
KRH40251	Soybean	cytosol	44.93	39.87
KRH00975	Soybean	nucleus	43.48	39.87
PGSC0003DMT400004234	Potato	nucleus	41.67	36.86
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	40.94	36.69
VIT_15s0021g00520.t01	Wine grape	nucleus	40.22	36.63
CDX98409	Canola	nucleus	31.88	36.51
CDY64077	Canola	cytosol	32.25	36.33
Bra003403.1-P	Field mustard	cytosol	31.88	35.77
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	34.78	35.29
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	34.42	35.06
CDX89054	Canola	cytosol	36.96	35.05
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	34.42	34.8
Bra004849.1-P	Field mustard	plastid	34.42	33.81
CDX74671	Canola	plastid	34.42	33.81
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	37.32	33.77
CDY48240	Canola	plastid	33.7	33.7
CDY42673	Canola	nucleus	35.14	33.56
CDY23445	Canola	nucleus	29.71	33.47
Bra014506.1-P	Field mustard	cytosol	35.14	33.33
CDY30478	Canola	nucleus	29.71	33.2
Zm00001d017657_P001	Maize	nucleus	33.7	32.75
Bra037642.1-P	Field mustard	nucleus	28.99	32.52
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	35.87	31.63
TraesCS2D01G451800.1	Wheat	nucleus	32.25	31.45
Os04t0588000-00	Rice	nucleus	17.03	30.92
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.52	30.53
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	31.52	30.53
TraesCS2B01G473100.1	Wheat	cytosol	30.8	30.47
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	31.52	30.21
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	31.52	30.1
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	31.52	30.0
EES05698	Sorghum	nucleus	33.33	29.97
GSMUA_Achr3P27500_001	Banana	cytosol	32.61	29.9
Zm00001d002512_P001	Maize	cytosol	30.07	28.92
Zm00001d051505_P001	Maize	nucleus	30.07	28.52
GSMUA_Achr2P04810_001	Banana	nucleus	30.43	28.47
Zm00001d047060_P001	Maize	nucleus	23.55	28.02
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	21.01	27.49
EES12746	Sorghum	nucleus	29.35	27.36
GSMUA_Achr10P...	Banana	nucleus	28.62	27.05
HORVU1Hr1G054570.1	Barley	nucleus	26.09	26.57
Zm00001d030004_P001	Maize	mitochondrion, nucleus	28.26	26.17
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	25.72	25.27
TraesCS1B01G227800.1	Wheat	nucleus	25.36	24.91
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	25.72	24.74
Os10t0567600-01	Rice	plasma membrane	26.09	24.66
EER91903	Sorghum	nucleus	27.9	23.77
HORVU7Hr1G082390.1	Barley	nucleus	24.28	19.71

Protein Annotations

EMBL:ACUP02004311	EnsemblPlants:KRH48907	EnsemblPlantsGene:GLYMA_07G120800	EntrezGene:102667616	PANTHER:PTHR35486	ProteinID:KRH48907
ProteinID:KRH48907.1	SEG:seg	UniParc:UPI0001BA8E84	UniProt:I1KJE1	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr7:-:14000529..14001359

Molecular Weight (calculated)

30749.0 Da

IEP (calculated)

10.898

GRAVY (calculated)

-0.920

Length

276 amino acids

Sequence
(BLAST)

001: MRCKKHLPDL TSTIGVCASC LRERLQPLLA AQAQSERSTN SDVDNNNHRR RKPKLKPEEN PLPLNFPRSV SPYVTHRKSD CERRRERLFY GTPQMNAAAC
101: DGGAASENRR HGGRFWILSN LFRARSNKTE SSPSHPPPSW FSTILHARRH NKCRHADRGL SPLTEVENFT EFSADTAQDR SDSGISSEDS PAKQNPTPET
201: AHRRSRMGPA GKGLASMAFC LSPLVRAGPN RHWSYHNKGL APELGVSGAH HISNAASFCA NRSRKLADFG RGTHNR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.