Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- peroxisome 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0205700-01 | |
Os05t0207500-01 | |
Os10t0512800-01 | |
Os10t0521700-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G60200.1 | Os01t0205700-01 | AT1G06390.1 | 21798944 |
AT3G60200.1 | Os05t0207500-01 | AT1G06390.1 | 21798944 |
AT3G60200.1 | Os10t0521700-01 | AT4G00720.1 | 21798944 |
AT3G60200.1 | Os10t0512800-01 | AT4G39050.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU1Hr1G054570.1 | Barley | nucleus | 60.96 | 65.68 |
TraesCS1D01G216900.1 | Wheat | mitochondrion, nucleus | 63.7 | 64.81 |
TraesCS1B01G227800.1 | Wheat | nucleus | 60.62 | 62.99 |
TraesCS1A01G214000.1 | Wheat | mitochondrion, nucleus | 60.27 | 62.63 |
Zm00001d047060_P001 | Maize | nucleus | 47.26 | 59.48 |
EER91903 | Sorghum | nucleus | 61.64 | 55.56 |
HORVU7Hr1G082390.1 | Barley | nucleus | 57.19 | 49.12 |
Os04t0588000-00 | Rice | nucleus | 22.6 | 43.42 |
Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 39.38 | 39.66 |
KRH66386 | Soybean | mitochondrion | 7.88 | 32.86 |
GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 21.23 | 29.38 |
KRH00975 | Soybean | nucleus | 29.45 | 28.57 |
VIT_15s0021g00520.t01 | Wine grape | nucleus | 29.11 | 28.05 |
KRH40251 | Soybean | cytosol | 29.79 | 27.97 |
Bra003403.1-P | Field mustard | cytosol | 23.29 | 27.64 |
CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 25.68 | 27.57 |
Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 25.68 | 27.47 |
CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 25.0 | 26.94 |
CDY64077 | Canola | cytosol | 22.26 | 26.53 |
Bra004849.1-P | Field mustard | plastid | 25.34 | 26.33 |
CDX74671 | Canola | plastid | 25.34 | 26.33 |
CDX98409 | Canola | nucleus | 21.58 | 26.14 |
KRH48907 | Soybean | nucleus | 24.66 | 26.09 |
Bra037642.1-P | Field mustard | nucleus | 21.58 | 25.61 |
CDY42673 | Canola | nucleus | 25.34 | 25.61 |
Bra014506.1-P | Field mustard | cytosol | 25.34 | 25.43 |
CDY48240 | Canola | plastid | 23.97 | 25.36 |
CDX89054 | Canola | cytosol | 25.0 | 25.09 |
PGSC0003DMT400004234 | Potato | nucleus | 26.71 | 25.0 |
Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 26.37 | 25.0 |
AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 25.68 | 24.59 |
CDY23445 | Canola | nucleus | 20.21 | 24.08 |
AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 25.68 | 23.96 |
CDY30478 | Canola | nucleus | 20.21 | 23.89 |
Protein Annotations
EnsemblPlants:Os10t0567600-01 | EnsemblPlantsGene:Os10g0567600 | InterPro:UPF0503 | PANTHER:PTHR35486 | PFAM:PF05340 | ProteinID:AAL79696.1 |
ProteinID:AAP55075.1 | ProteinID:BAF27272.1 | ProteinID:BAT12127.1 | SEG:seg | UniParc:UPI00000A006D | UniProt:Q7XC01 |
MapMan:35.2 | : | : | : | : | : |
Description
Uncharacterised protein family UPF0503 domain containing protein. (Os10t0567600-01)
Coordinates
chr10:-:22497930..22499180
Molecular Weight (calculated)
30678.7 Da
IEP (calculated)
11.661
GRAVY (calculated)
-0.667
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKLHPYAN AVGVCAPCLR DRLLDLAAQR DAAADAAEAD DHHHSSSSRA SSSLFARSVS PYAAARRSDA CAYASSSSSS AAAAHHHHHH PNLLFFRTPQ
101: VGPARAAGGG DEPEPRGKKV ARRRSFLAAI FGGGGRGRHA RGDDDVVRGG GVSAKDPPRR STSWLSSIVR RKRRPEAAAT AAESLPPPLD EAPDSPGGST
201: TSSWWFPSPS PARQHRRRHT GVGASGDGIS GFAVCLSPLV RPTSGGGGGR RRCQPPDPSP LGDTHRRNLS AGGAASFGRN TSRKLADMGR FR
101: VGPARAAGGG DEPEPRGKKV ARRRSFLAAI FGGGGRGRHA RGDDDVVRGG GVSAKDPPRR STSWLSSIVR RKRRPEAAAT AAESLPPPLD EAPDSPGGST
201: TSSWWFPSPS PARQHRRRHT GVGASGDGIS GFAVCLSPLV RPTSGGGGGR RRCQPPDPSP LGDTHRRNLS AGGAASFGRN TSRKLADMGR FR
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.