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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 4
  • plastid 1
  • peroxisome 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G054570.1 Barley nucleus 60.96 65.68
TraesCS1D01G216900.1 Wheat mitochondrion, nucleus 63.7 64.81
TraesCS1B01G227800.1 Wheat nucleus 60.62 62.99
TraesCS1A01G214000.1 Wheat mitochondrion, nucleus 60.27 62.63
Zm00001d047060_P001 Maize nucleus 47.26 59.48
EER91903 Sorghum nucleus 61.64 55.56
HORVU7Hr1G082390.1 Barley nucleus 57.19 49.12
Os04t0588000-00 Rice nucleus 22.6 43.42
Os02t0689500-01 Rice cytosol, mitochondrion, nucleus, plastid 39.38 39.66
KRH66386 Soybean mitochondrion 7.88 32.86
GSMUA_AchrUn_... Banana cytosol, mitochondrion, nucleus, plastid 21.23 29.38
KRH00975 Soybean nucleus 29.45 28.57
VIT_15s0021g00520.t01 Wine grape nucleus 29.11 28.05
KRH40251 Soybean cytosol 29.79 27.97
Bra003403.1-P Field mustard cytosol 23.29 27.64
CDY41187 Canola cytosol, mitochondrion, nucleus, plastid 25.68 27.57
Bra007514.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 25.68 27.47
CDX71830 Canola cytosol, mitochondrion, nucleus, plastid 25.0 26.94
CDY64077 Canola cytosol 22.26 26.53
Bra004849.1-P Field mustard plastid 25.34 26.33
CDX74671 Canola plastid 25.34 26.33
CDX98409 Canola nucleus 21.58 26.14
KRH48907 Soybean nucleus 24.66 26.09
Bra037642.1-P Field mustard nucleus 21.58 25.61
CDY42673 Canola nucleus 25.34 25.61
Bra014506.1-P Field mustard cytosol 25.34 25.43
CDY48240 Canola plastid 23.97 25.36
CDX89054 Canola cytosol 25.0 25.09
PGSC0003DMT400004234 Potato nucleus 26.71 25.0
Solyc01g088530.2.1 Tomato mitochondrion, nucleus 26.37 25.0
AT3G60200.1 Thale cress cytosol, mitochondrion, nucleus, plastid 25.68 24.59
CDY23445 Canola nucleus 20.21 24.08
AT2G44600.1 Thale cress cytosol, mitochondrion, nucleus, plastid 25.68 23.96
CDY30478 Canola nucleus 20.21 23.89
Protein Annotations
EnsemblPlants:Os10t0567600-01EnsemblPlantsGene:Os10g0567600InterPro:UPF0503PANTHER:PTHR35486PFAM:PF05340ProteinID:AAL79696.1
ProteinID:AAP55075.1ProteinID:BAF27272.1ProteinID:BAT12127.1SEG:segUniParc:UPI00000A006DUniProt:Q7XC01
MapMan:35.2:::::
Description
Uncharacterised protein family UPF0503 domain containing protein. (Os10t0567600-01)
Coordinates
chr10:-:22497930..22499180
Molecular Weight (calculated)
30678.7 Da
IEP (calculated)
11.661
GRAVY (calculated)
-0.667
Length
292 amino acids
Sequence
(BLAST)
001: MRCKLHPYAN AVGVCAPCLR DRLLDLAAQR DAAADAAEAD DHHHSSSSRA SSSLFARSVS PYAAARRSDA CAYASSSSSS AAAAHHHHHH PNLLFFRTPQ
101: VGPARAAGGG DEPEPRGKKV ARRRSFLAAI FGGGGRGRHA RGDDDVVRGG GVSAKDPPRR STSWLSSIVR RKRRPEAAAT AAESLPPPLD EAPDSPGGST
201: TSSWWFPSPS PARQHRRRHT GVGASGDGIS GFAVCLSPLV RPTSGGGGGR RRCQPPDPSP LGDTHRRNLS AGGAASFGRN TSRKLADMGR FR
Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.