Factsheet for Bra014506.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000961.1-P
Bra009783.1-P
Bra009916.1-P
Bra010714.1-P
Bra020466.1-P
Bra033597.1-P
Bra036593.1-P
Bra037354.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	Bra000961.1-P	AT4G00720.1	21798944
AT3G60200.1	Bra037354.1-P	AT4G00720.1	21798944
AT3G60200.1	Bra010714.1-P	AT4G39050.1	21798944
AT3G60200.1	Bra033597.1-P	AT4G39050.1	21798944
AT3G60200.1	Bra009783.1-P	AT5G24660.1	21798944
AT3G60200.1	Bra020466.1-P	AT5G24660.1	21798944
AT3G60200.1	Bra009916.1-P	AT5G26751.1	21798944
AT3G60200.1	Bra036593.1-P	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89054	Canola	cytosol	91.41	91.41
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.86	65.93
Bra003403.1-P	Field mustard	cytosol	51.2	60.57
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	62.2	59.34
Bra004849.1-P	Field mustard	plastid	46.39	48.04
Bra037642.1-P	Field mustard	nucleus	38.49	45.53
KRH66386	Soybean	mitochondrion	9.62	40.0
VIT_15s0021g00520.t01	Wine grape	nucleus	37.46	35.97
KRH48907	Soybean	nucleus	33.33	35.14
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	37.11	35.06
PGSC0003DMT400004234	Potato	nucleus	37.11	34.62
KRH40251	Soybean	cytosol	36.77	34.41
KRH00975	Soybean	nucleus	35.05	33.89
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	32.99	33.1
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	30.24	30.88
TraesCS2B01G473100.1	Wheat	cytosol	29.21	30.47
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	29.55	29.86
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.21	29.82
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	29.21	29.41
TraesCS2D01G451800.1	Wheat	nucleus	28.52	29.33
Os04t0588000-00	Rice	nucleus	15.12	28.95
Zm00001d002512_P001	Maize	cytosol	28.52	28.92
Zm00001d017657_P001	Maize	nucleus	28.18	28.87
EES05698	Sorghum	nucleus	30.24	28.66
Zm00001d051505_P001	Maize	nucleus	28.52	28.52
Zm00001d047060_P001	Maize	nucleus	22.68	28.45
EES12746	Sorghum	nucleus	28.52	28.04
GSMUA_Achr2P04810_001	Banana	nucleus	27.49	27.12
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	19.59	27.01
GSMUA_Achr3P27500_001	Banana	cytosol	27.84	26.91
GSMUA_Achr10P...	Banana	nucleus	26.8	26.71
Zm00001d030004_P001	Maize	mitochondrion, nucleus	27.15	26.51
HORVU1Hr1G054570.1	Barley	nucleus	23.71	25.46
Os10t0567600-01	Rice	plasma membrane	25.43	25.34
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	24.05	24.91
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	24.05	24.39
TraesCS1B01G227800.1	Wheat	nucleus	22.68	23.49
EER91903	Sorghum	nucleus	25.77	23.15
HORVU7Hr1G082390.1	Barley	nucleus	22.68	19.41

Protein Annotations

EnsemblPlants:Bra014506.1	EnsemblPlants:Bra014506.1-P	EnsemblPlantsGene:Bra014506	PANTHER:PTHR35486	SEG:seg	UniParc:UPI0002543DDD
UniProt:M4DDD8	MapMan:35.2	:	:	:	:

Description

AT3G60200 (E=1e-066) | unknown protein

Coordinates

chrA04:-:1074252..1075127

Molecular Weight (calculated)

32035.0 Da

IEP (calculated)

10.816

GRAVY (calculated)

-0.676

Length

291 amino acids

Sequence
(BLAST)

001: MRCKRHTVDF TSNLGGVCAS CLRERLLSLA AYAAAEDNNN RQSRKSNKPP PLLIFPRSVS PYVTGRKSDA GGGDRRFLAA PQVDLGFSCK DFESHRSSKS
101: KGGKASRISN LFRARSEDYG CNRKPVSINY GSDRKPVSRF SCDGSESSWF SSFLSTVRSK KQPATACYIE DAISGHRRPQ RVFCRGMSPA RDESEPPSET
201: IEETPGSSRR TPAVKTPGRR KIAAGIGFCL SPLVRAKPHC PFKRKTRFPS EVVGSAGEVT VLEKPHIAEA ASFCGNRSKK LVDLGRVHHR R

Best Arabidopsis Sequence Match ( AT3G60200.1 )
(BLAST)

001: MRCKRHTVDL SSSNGVCASC LRERLLSLAA SAAVSAAVED NQSKKSNNNN HPPLLIFPRS VSPYVTRRKS DAGAGGGDPL VSSNRRFITT PQIDLVGYSC
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR

Arabidopsis Description

Uncharacterized protein At3g60200 [Source:UniProtKB/TrEMBL;Acc:Q9M1C3]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.