Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 74.3 | 72.76 |
| TraesCS6B01G290200.1 | Wheat | mitochondrion, nucleus | 71.83 | 70.83 |
| TraesCS6D01G243600.1 | Wheat | mitochondrion, nucleus | 70.77 | 70.53 |
| TraesCS6A01G263100.1 | Wheat | mitochondrion, nucleus | 70.77 | 69.55 |
| EES05698 | Sorghum | nucleus | 75.0 | 69.38 |
| Zm00001d051505_P001 | Maize | nucleus | 67.25 | 65.64 |
| Zm00001d002512_P001 | Maize | cytosol | 52.82 | 52.26 |
| KRH66386 | Soybean | mitochondrion | 9.86 | 40.0 |
| Zm00001d030004_P001 | Maize | mitochondrion, nucleus | 40.85 | 38.93 |
| Zm00001d047060_P001 | Maize | nucleus | 28.87 | 35.34 |
| KRH00975 | Soybean | nucleus | 36.62 | 34.55 |
| KRH40251 | Soybean | cytosol | 37.32 | 34.08 |
| KRH48907 | Soybean | nucleus | 32.75 | 33.7 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 36.27 | 33.44 |
| PGSC0003DMT400004234 | Potato | nucleus | 36.62 | 33.33 |
| Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 31.34 | 32.6 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.99 | 32.47 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.99 | 32.35 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 23.59 | 31.75 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 33.8 | 31.68 |
| CDY23445 | Canola | nucleus | 25.35 | 29.39 |
| CDX89054 | Canola | cytosol | 29.58 | 28.87 |
| AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 30.63 | 28.52 |
| CDX74671 | Canola | plastid | 28.17 | 28.47 |
| Bra004849.1-P | Field mustard | plastid | 28.17 | 28.47 |
| CDY48240 | Canola | plastid | 27.46 | 28.26 |
| Bra014506.1-P | Field mustard | cytosol | 28.87 | 28.18 |
| Bra037642.1-P | Field mustard | nucleus | 24.3 | 28.05 |
| CDY30478 | Canola | nucleus | 24.3 | 27.94 |
| CDX98409 | Canola | nucleus | 23.59 | 27.8 |
| CDY64077 | Canola | cytosol | 23.94 | 27.76 |
| Bra003403.1-P | Field mustard | cytosol | 23.94 | 27.64 |
| CDY42673 | Canola | nucleus | 27.82 | 27.34 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 29.58 | 26.84 |
Protein Annotations
| EMBL:BT040018 | EnsemblPlants:Zm00001d017657_P001 | EnsemblPlants:Zm00001d017657_T001 | EnsemblPlantsGene:Zm00001d017657 | EntrezGene:100284810 | InterPro:UPF0503 |
| PANTHER:PTHR31659 | PANTHER:PTHR31659:SF2 | PFAM:PF05340 | ProteinID:AQK73646.1 | SEG:seg | UniParc:UPI00017B826F |
| UniProt:B4FSD0 | MapMan:35.2 | : | : | : | : |
Description
OSJNBb0016D16.16 protein; protein
Coordinates
chr5:-:203305145..203305999
Molecular Weight (calculated)
30909.5 Da
IEP (calculated)
11.835
GRAVY (calculated)
-0.824
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKKHPYQV GGGGVCATCL RDRLIALEAA QNGDASSSPP PPAAAPAFPR SVSPYVSRRK SDTSGGGGAL RHHPSLLFFR TPQVGPAYGG GALEEGDIGY
101: EYKRRRAGKF SVLATLFGHH HGHRSEETHQ EGATERKKHS WFAAIMPRRR KKQAAPASIT SPRSAPPRRS CRVVSNRGLS PERDSHGSGD ESSSPAADPP
201: WRPSPSPMRR TRCRRRQTNS MPSGFAVCLS PLVRPSPGRR RHVQPPDPGS FSSEFRPSPL HSLSSAASVT RCRSRKLADV GRFR
101: EYKRRRAGKF SVLATLFGHH HGHRSEETHQ EGATERKKHS WFAAIMPRRR KKQAAPASIT SPRSAPPRRS CRVVSNRGLS PERDSHGSGD ESSSPAADPP
201: WRPSPSPMRR TRCRRRQTNS MPSGFAVCLS PLVRPSPGRR RHVQPPDPGS FSSEFRPSPL HSLSSAASVT RCRSRKLADV GRFR
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.