Factsheet for TraesCS1B01G227800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G125000.1
TraesCS1A01G177600.1
TraesCS1A01G189000.1
TraesCS1B01G142300.1
TraesCS1B01G196700.3
TraesCS1B01G202600.1
TraesCS1B01G361800.1
TraesCS1D01G129000.2
TraesCS1D01G176100.1
TraesCS1D01G187400.1
TraesCS3A01G136500.1
TraesCS3D01G137200.1
TraesCS4A01G361100.1
TraesCS4A01G365100.1
TraesCS5A01G259000.1
TraesCS5B01G230700.1
TraesCS5B01G511800.1
TraesCS5D01G512300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	TraesCS1A01G125000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G142300.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G361800.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1D01G129000.2	AT1G06390.1	21798944
AT3G60200.1	TraesCS3A01G136500.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS3D01G137200.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS4A01G365100.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5A01G259000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5B01G230700.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1A01G189000.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1B01G196700.3	AT4G00720.1	21798944
AT3G60200.1	TraesCS1D01G187400.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1D01G176100.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS4A01G361100.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5B01G511800.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5D01G512300.2	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	93.24	91.29
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	90.39	90.39
HORVU1Hr1G054570.1	Barley	nucleus	83.99	87.08
HORVU7Hr1G082390.1	Barley	nucleus	79.0	65.29
Os10t0567600-01	Rice	plasma membrane	62.99	60.62
Zm00001d047060_P001	Maize	nucleus	46.98	56.9
EER91903	Sorghum	nucleus	63.35	54.94
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	38.79	37.85
KRH66386	Soybean	mitochondrion	8.9	35.71
TraesCS2B01G473100.1	Wheat	cytosol	35.23	35.48
KRH00975	Soybean	nucleus	30.96	28.9
KRH40251	Soybean	cytosol	31.67	28.62
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	20.64	27.49
VIT_15s0021g00520.t01	Wine grape	nucleus	29.18	27.06
PGSC0003DMT400004234	Potato	nucleus	29.54	26.6
Bra003403.1-P	Field mustard	cytosol	22.78	26.02
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	28.47	25.97
CDX98409	Canola	nucleus	22.06	25.73
KRH48907	Soybean	nucleus	24.91	25.36
CDY64077	Canola	cytosol	22.06	25.31
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	24.2	25.0
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.2	24.91
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	23.49	24.35
Bra037642.1-P	Field mustard	nucleus	21.0	23.98
CDY48240	Canola	plastid	23.49	23.91
Bra004849.1-P	Field mustard	plastid	23.84	23.84
CDX74671	Canola	plastid	23.84	23.84
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	25.62	23.61
Bra014506.1-P	Field mustard	cytosol	23.49	22.68
CDY30478	Canola	nucleus	19.93	22.67
CDY42673	Canola	nucleus	23.13	22.49
CDX89054	Canola	cytosol	23.13	22.34
CDY23445	Canola	nucleus	19.22	22.04
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	24.2	21.73

Protein Annotations

EnsemblPlants:TraesCS1B01G227800.1	EnsemblPlantsGene:TraesCS1B01G227800	InterPro:UPF0503	PANTHER:PTHR35486	PFAM:PF05340	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:409598992..409600045

Molecular Weight (calculated)

30565.5 Da

IEP (calculated)

11.845

GRAVY (calculated)

-0.942

Length

281 amino acids

Sequence
(BLAST)

001: MRCKLHPYAN ALGVCAPCLR DRLLVLAAER DRAGASSGAD CSSSSSRGSS PTRGRAASPF AAAPAQQHRR SDACAYTSSR HSHSHRPELL FFSTPQVGPA
101: TRAADDEPRE TERKKSFQRR RSFLATLFGG GRRGSREEES ESKKDPPRRS TSWLSAIVRR KRRPDASSSS SLPRPVDEEP ESPGGSMSGS WWFPSPSPAR
201: HHHHPQRRSR PSGSGASGDG ISGFAVCLSP LVRPSTGGRR RCQQPDPSTL GESHRRHLSA SSAASFGRNT SRKLADMGRF R

Best Arabidopsis Sequence Match ( AT1G21830.1 )
(BLAST)

001: MDMYKDDSSP YCYFHPKEEY VGVCPLCLNE RLLVLASKQR SSRTKHSSSS PIISLPKIFA LSSLLSRLDL RHRKFHPSSD LDVSTSQEDS FISIKFENDG
101: NASWEKKAVV TKVCVDNNNN NTTNSTCKKQ QSPITSNTSI VEHNSAKSSL RWRKRIGHLF HVIKLKSGSS TSSCHVAPSK VEGTKVRKQG WMVRTLTRKK
201: SRKSKS

Arabidopsis Description

At1g21820 [Source:UniProtKB/TrEMBL;Acc:Q8VY47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.