Factsheet for Solyc04g025600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc02g085000.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06390.1	Solyc02g085000.2.1	AT3G50910.1	21798944
AT2G30980.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT2G30980.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT2G30980.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT2G30980.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT2G30980.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT2G30980.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT2G30980.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT2G30980.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT2G30980.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT2G30980.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT2G30980.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT2G30980.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT2G30980.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT2G30980.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT2G30980.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT2G30980.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT2G30980.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10766	Canola	extracellular, plasma membrane, vacuole	54.21	25.89
Solyc06g082640.2.1	Tomato	cytosol	52.34	24.89
Os01t0205700-01	Rice	cytosol	48.6	22.32
CDY52692	Canola	cytosol, mitochondrion, nucleus	21.5	20.35
Bra018285.1-P	Field mustard	cytosol	58.88	17.85
Solyc02g072300.2.1	Tomato	cytosol	63.55	17.8
Solyc03g006070.2.1	Tomato	cytosol	63.55	17.8
CDY66894	Canola	cytosol	58.88	16.84
Bra021685.1-P	Field mustard	cytosol	59.81	15.61
CDX97773	Canola	cytosol	59.81	15.61
TraesCS3A01G136500.1	Wheat	cytosol	55.14	15.61
AT1G06390.1	Thale cress	cytosol	58.88	15.48
TraesCS1A01G125000.1	Wheat	cytosol	57.94	15.42
TraesCS1D01G129000.2	Wheat	cytosol	57.94	15.42
TraesCS1B01G142300.1	Wheat	cytosol	57.94	15.42
AT2G30980.1	Thale cress	cytosol	58.88	15.29
KRH55721	Soybean	cytosol	59.81	15.27
Solyc02g086670.2.1	Tomato	cytosol	57.01	15.1
KRH25797	Soybean	cytosol	58.88	15.0
Os05t0207500-01	Rice	cytosol	56.07	14.93
KRH22265	Soybean	cytosol	57.94	14.87
EES00093	Sorghum	cytosol	56.07	14.85
Zm00001d008893_P001	Maize	cytosol	56.07	14.78
KRH27067	Soybean	cytosol	56.07	14.67
Solyc01g101000.2.1	Tomato	cytosol	56.07	14.67
Solyc12g062870.1.1	Tomato	cytosol	56.07	14.63
TraesCS3D01G137200.1	Wheat	cytosol	54.21	14.46
Solyc07g055200.2.1	Tomato	cytosol	58.88	14.42
HORVU3Hr1G026020.3	Barley	mitochondrion	55.14	14.25
Solyc01g103430.2.1	Tomato	cytosol	55.14	13.98
Zm00001d039407_P001	Maize	cytosol	55.14	13.75
Solyc10g037910.1.1	Tomato	cytosol, plasma membrane	29.91	13.62
Solyc05g051050.2.1	Tomato	cytosol, mitochondrion	54.21	12.45
Solyc01g091620.2.1	Tomato	cytosol, mitochondrion	55.14	12.42
Solyc03g044140.2.1	Tomato	cytosol, nucleus	29.91	9.61
Solyc02g092640.2.1	Tomato	cytosol, nucleus	28.97	9.31
HORVU6Hr1G008360.2	Barley	mitochondrion, peroxisome, plasma membrane	18.69	8.89
TraesCS1B01G361800.1	Wheat	endoplasmic reticulum, extracellular, plastid	8.41	7.83
TraesCS5A01G259000.1	Wheat	endoplasmic reticulum, extracellular, plastid	8.41	7.83
TraesCS4A01G365100.1	Wheat	endoplasmic reticulum, extracellular, plastid	8.41	7.69
TraesCS5B01G230700.1	Wheat	endoplasmic reticulum, extracellular, plastid	8.41	7.69
Solyc02g064700.2.1	Tomato	plastid	28.04	7.03
HORVU2Hr1G051860.1	Barley	cytosol	9.35	5.95
HORVU6Hr1G046490.1	Barley	cytosol	5.61	4.76

Protein Annotations

EnsemblPlants:Solyc04g025600.1.1	EnsemblPlantsGene:Solyc04g025600.1	Gene3D:1.10.510.10	ncoils:Coil	PANTHER:PTHR24057	PANTHER:PTHR24057:SF12
UniParc:UPI0002765C25	UniProt:K4BR05	MapMan:50.2.7	:	:	:

Description

No Description!

Coordinates

chr4:+:21758170..21761046

Molecular Weight (calculated)

12639.1 Da

IEP (calculated)

6.943

GRAVY (calculated)

-0.554

Length

107 amino acids

Sequence
(BLAST)

001: MTKIVCFQNG SFELDSSKTL QVETYVWFNK RDPNLHGEWD FEPLFPGENT VDQLVEITKV LGTPTREEIR CMNPNYTDFR FPQIKAHPWH KVLFARMISD
101: KNVPLHK

Best Arabidopsis Sequence Match ( AT1G06390.1 )
(BLAST)

001: MASLPLGPQP HALAPPLQLH DGDALKRRPE LDSDKEMSAA VIEGNDAVTG HIISTTIGGK NGEPKQTISY MAERVVGTGS FGIVFQAKCL ETGESVAIKK
101: VLQDRRYKNR ELQLMRPMDH PNVISLKHCF FSTTSRDELF LNLVMEYVPE TLYRVLRHYT SSNQRMPIFY VKLYTYQIFR GLAYIHTVPG VCHRDVKPQN
201: LLVDPLTHQV KLCDFGSAKV LVKGEPNISY ICSRYYRAPE LIFGATEYTA SIDIWSAGCV LAELLLGQPL FPGENSVDQL VEIIKVLGTP TREEIRCMNP
301: NYTDFRFPQI KAHPWHKVFH KRMPPEAIDL ASRLLQYSPS LRCTALEACA HPFFNELREP NARLPNGRPL PPLFNFKQEL GGASMELINR LIPEHVRRQM
401: STGLQNS

Arabidopsis Description

ASK9SK22 [Source:UniProtKB/TrEMBL;Acc:A0A178WCN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.