Factsheet for Solyc02g092640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc01g088740.2.1
Solyc03g005240.1.1
Solyc05g050680.2.1
Solyc06g053930.2.1
Solyc10g005080.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23080.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT2G23080.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT2G23080.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT2G23080.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT2G23080.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT2G23080.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT2G23080.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT2G23080.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT2G23080.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT2G23080.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT2G23080.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT2G23080.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT2G23080.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT2G23080.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT2G23080.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT2G23080.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT2G23080.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT5G67380.1	Solyc10g005080.2.1	AT2G46830.1	14978263
AT5G67380.1	Solyc10g005080.2.1	AT2G46830.1	9724822
AT5G67380.1	Solyc01g088740.2.1	AT3G60250.1	10535927
AT5G67380.1	Solyc05g050680.2.1	AT3G60250.1	10535927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064191	Potato	cytosol	99.7	99.7
Solyc03g044140.2.1	Tomato	cytosol, nucleus	97.3	97.3
KRH28388	Soybean	cytosol	95.2	95.2
KRH77093	Soybean	nucleus	94.89	94.89
Bra029986.1-P	Field mustard	cytosol	93.09	94.22
CDX83104	Canola	cytosol	93.09	94.22
CDY70654	Canola	cytosol	48.65	94.19
CDY57680	Canola	cytosol	93.99	93.99
CDY30613	Canola	cytosol	93.99	93.99
CDY57359	Canola	cytosol	93.69	93.98
Os07t0114400-01	Rice	plasma membrane	93.69	93.69
GSMUA_Achr6P16850_001	Banana	cytosol	93.69	93.69
EER97857	Sorghum	cytosol	93.39	93.67
GSMUA_Achr5P01690_001	Banana	cytosol	93.09	93.09
GSMUA_Achr10P...	Banana	cytosol	92.79	92.79
TraesCS2D01G260500.1	Wheat	cytosol	92.49	92.49
HORVU2Hr1G063420.1	Barley	cytosol	92.49	92.49
Zm00001d007951_P001	Maize	cytosol, nucleus	92.19	92.47
TraesCS2A01G263400.1	Wheat	cytosol, nucleus	92.49	90.06
AT2G23080.1	Thale cress	cytosol	89.49	89.49
Os03t0207300-01	Rice	cytosol	87.39	87.65
TraesCS4A01G049900.1	Wheat	cytosol	86.19	86.45
TraesCS4D01G254600.1	Wheat	cytosol	86.19	86.45
TraesCS4B01G254800.1	Wheat	cytosol	85.29	86.32
HORVU4Hr1G069390.1	Barley	cytosol	85.89	86.14
EER90840	Sorghum	plastid	93.09	80.52
Bra036044.1-P	Field mustard	plasma membrane	93.99	80.46
Bra036806.1-P	Field mustard	cytosol	81.38	80.42
Zm00001d034125_P002	Maize	mitochondrion, plastid	92.79	80.26
TraesCS5A01G400100.1	Wheat	cytosol, mitochondrion	91.59	80.05
TraesCS5D01G410000.1	Wheat	plastid	91.59	80.05
CDX98044	Canola	cytosol	38.44	80.0
KRH04471	Soybean	nucleus	95.5	79.9
Zm00001d013217_P001	Maize	cytosol	91.89	79.9
HORVU5Hr1G097230.1	Barley	cytosol, plastid	91.59	79.84
TraesCS5B01G404900.1	Wheat	cytosol, mitochondrion	91.29	79.79
Zm00001d018669_P004	Maize	cytosol	88.59	78.46
AT3G50000.1	Thale cress	golgi, plasma membrane, vacuole	94.29	77.92
VIT_07s0129g00410.t01	Wine grape	golgi, plasma membrane	94.59	77.78
KRH58068	Soybean	mitochondrion	95.5	77.37
AT5G67380.1	Thale cress	golgi, plasma membrane	94.59	77.02
TraesCS2B01G278700.2	Wheat	cytosol	87.09	76.72
Bra031829.1-P	Field mustard	cytosol	61.86	75.18
Solyc02g064700.2.1	Tomato	plastid	87.69	68.38
CDY71648	Canola	plastid	32.73	67.7
CDY67469	Canola	vacuole	57.36	65.19
CDY15289	Canola	vacuole	52.25	63.04
CDY29766	Canola	golgi, plasma membrane	65.47	61.58
Os03t0762000-01	Rice	plastid	24.92	57.24
CDY25489	Canola	golgi, plasma membrane	58.56	40.12
Solyc04g025600.1.1	Tomato	cytosol	9.31	28.97
Solyc06g082640.2.1	Tomato	cytosol	18.92	28.0
Solyc10g037910.1.1	Tomato	cytosol, plasma membrane	18.92	26.81
Solyc02g072300.2.1	Tomato	cytosol	30.33	26.44
Solyc12g062870.1.1	Tomato	cytosol	32.13	26.1
Solyc02g086670.2.1	Tomato	cytosol	31.53	25.99
Solyc03g006070.2.1	Tomato	cytosol	29.43	25.65
Solyc01g101000.2.1	Tomato	cytosol	31.23	25.43
Solyc01g103430.2.1	Tomato	cytosol	30.63	24.17
Solyc07g055200.2.1	Tomato	cytosol	31.23	23.8
Solyc01g091620.2.1	Tomato	cytosol, mitochondrion	31.23	21.89
Solyc05g051050.2.1	Tomato	cytosol, mitochondrion	29.73	21.24

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	UniProt:K4BD60	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24054	PANTHER:PTHR24054:SF33	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc02g092640.2	EnsemblPlants:Solyc02g092640.2.1	UniParc:UPI000276812A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:53660258..53667092

Molecular Weight (calculated)

39375.4 Da

IEP (calculated)

8.693

GRAVY (calculated)

-0.538

Length

333 amino acids

Sequence
(BLAST)

001: MSKARVYTDI NVLRPREYWD YESLTVQWGD QDDYEVVRKV GRGKYSEVFE GINVNSREKC IIKILKPVKK KKIKREIKIL QNLCGGPNIV KLLDIVRDQH
101: SKTPSLIFEY VNSTDFKVLY PTLTDYDIRY YIYELLKALD YCHSQGIMHR DVKPHNVMID HELRKLRLID WGLAEFYHPG KEYNVRVASR YFKGPELLVD
201: LQDYDYSLDM WSLGCMFAGM IFRKEPFFYG HDNQDQLVKI AKVLGTDELN AYLHKYQLEL DPQLEAMVGR HSRKPWSKFI NADNQHLVSP EAIDYLDKLL
301: RYDHQTRLTA KEAMAHPYFG QVRAAETSRM RTQ

Best Arabidopsis Sequence Match ( AT5G67380.1 )
(BLAST)

001: MIDTLFFLFF LFFDSPLRRL LLLCAVLALR APTAHSPILR SSIVTPTARA VSEVSGCTTI DPDFLVEISD SNQTRAMSKA RVYTEVNVIR PKDYWDYESL
101: IVQWGEQDDY EVVRKVGRGK YSEVFEGINV NSKEKCIIKI LKPVKKKKIR REIKILQNLC GGPNIVKLLD VVRDQHSKTP SLIFEYVNST DFKVLYPTLT
201: DYDIRYYIYE LLKALDFCHS QGIMHRDVKP HNVMIDHELR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLQDY DYSLDMWSLG CMFAGMIFRK
301: EPFFYGHDNQ DQLVKIAKVL GTDELNAYLN KYQLELDPQL EALVGRHSRK PWSKFINADN QHLVSPEAID FLDKLLRYDH QDRLTAKEAM AHAYFAQVRA
401: AETSRMRSQ

Arabidopsis Description

CKA1Casein kinase II subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q08467]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.