Factsheet for Solyc02g064700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g064700.2.1
Solyc03g097320.2.1
Solyc03g122030.1.1
Solyc06g007110.2.1
Solyc06g072710.2.1
Solyc09g008040.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23070.1	Solyc03g097320.2.1	AT1G64860.1	22111690
AT2G23070.1	Solyc06g072710.2.1	AT1G64860.1	22111690
AT2G23070.1	Solyc02g064700.2.1	AT2G23070.1	22111690
AT2G23070.1	Solyc09g008040.2.1	AT2G36990.1	22111690
AT2G23070.1	Solyc03g122030.1.1	AT3G14180.1	21798944
AT2G23070.1	Solyc06g007110.2.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58078	Soybean	cytosol	4.22	94.74
KRH04448	Soybean	nucleus	75.41	92.8
CDX76880	Canola	cytosol, mitochondrion	74.94	92.22
Solyc02g092640.2.1	Tomato	cytosol, nucleus	68.38	87.69
Solyc03g044140.2.1	Tomato	cytosol, nucleus	68.38	87.69
Bra032182.1-P	Field mustard	plastid	77.75	82.79
CDY38928	Canola	plastid	77.75	82.79
VIT_07s0129g00270.t01	Wine grape	mitochondrion	82.2	82.78
KRH58076	Soybean	endoplasmic reticulum	75.41	82.14
CDX89544	Canola	plastid	79.16	81.06
Bra039942.1-P	Field mustard	plastid	78.69	80.0
CDY49445	Canola	plastid	78.45	79.57
AT2G23070.1	Thale cress	plastid	79.63	78.7
GSMUA_Achr6P34710_001	Banana	golgi, plasma membrane, vacuole	74.24	78.66
HORVU4Hr1G030100.1	Barley	cytosol	16.39	76.09
GSMUA_Achr9P09590_001	Banana	mitochondrion, plastid	73.77	72.08
Os03t0763000-01	Rice	plastid	64.4	67.4
KXG37490	Sorghum	mitochondrion	64.87	67.4
Zm00001d034137_P001	Maize	plastid	60.42	65.82
TraesCS5A01G400900.1	Wheat	mitochondrion, plastid	62.76	65.05
TraesCS5B01G405700.1	Wheat	mitochondrion, plastid	62.76	64.89
TraesCS5D01G411100.1	Wheat	mitochondrion	62.53	64.65
HORVU5Hr1G097400.2	Barley	cytosol, mitochondrion, nucleus, plastid	63.0	62.85
Zm00001d032025_P001	Maize	mitochondrion	26.93	58.08
Solyc04g025600.1.1	Tomato	cytosol	7.03	28.04
Solyc06g082640.2.1	Tomato	cytosol	14.52	27.56
Solyc10g037910.1.1	Tomato	cytosol, plasma membrane	14.99	27.23
Solyc12g062870.1.1	Tomato	cytosol	26.0	27.07
Solyc02g086670.2.1	Tomato	cytosol	25.53	26.98
Solyc01g101000.2.1	Tomato	cytosol	25.53	26.65
Solyc02g072300.2.1	Tomato	cytosol	23.65	26.44
Solyc03g006070.2.1	Tomato	cytosol	22.95	25.65
Solyc01g103430.2.1	Tomato	cytosol	25.06	25.36
Solyc07g055200.2.1	Tomato	cytosol	25.76	25.17
Solyc01g091620.2.1	Tomato	cytosol, mitochondrion	26.23	23.58
Solyc05g051050.2.1	Tomato	cytosol, mitochondrion	24.12	22.1

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0010019	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0040007	GO:GO:0040008	GO:GO:2000028	InterPro:IPR000719
UniProt:K4B6Q6	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24054	PANTHER:PTHR24054:SF33	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc02g064700.2	EnsemblPlants:Solyc02g064700.2.1	UniParc:UPI000276883D	SEG:seg	:

Description

Casein kinase II subunit alpha-4, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G23070) UniProtKB/Swiss-Prot;Acc:O64816]

Coordinates

chr2:-:35795204..35804269

Molecular Weight (calculated)

49465.5 Da

IEP (calculated)

9.774

GRAVY (calculated)

-0.505

Length

427 amino acids

Sequence
(BLAST)

001: MALRPSHFFI VSFHHRLLSH SPATSLLLFP SLLRRFSSNT SVSLTRHKHK SSSLPPPPPP PPPPSSSSSL LRPSATLSEA LAQKIGKSIR RPGAPSKARV
101: YTDINVIRPK EYWDYESLTV QWGEQDDYEV VRKVGRGKYS EVFEGIHTTN NEKCIIKILK PVKKKKIKRE IKILQNLCGG PNIVKLLDIV RDQQSKTPSL
201: IFEYVNNTDF KVLYPTLSDF DVRYYIYELL KALDYCHSQG IMHRDVKPHN VMIDHEQRKL RLIDWGLAEF YHPGKEYNVR VASRYFKGPE LLVDLQDYDY
301: SLDLWSLGCM FAGMIFRKEP FFYGHDNYDQ LVKIGKVLGT DELNSYLNKY RLELDPHLAA LVGRHSRKPW AKFINSENQH LAVPEAVDFV DKLLRYDHQE
401: RPTAKEAMAH PYFYPVRNAE SSRTRAH

Best Arabidopsis Sequence Match ( AT2G23070.1 )
(BLAST)

001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ

Arabidopsis Description

CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.