Factsheet for Zm00001d034137_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 5
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003549_P001
Zm00001d010753_P001
Zm00001d012810_P003
Zm00001d016876_P001
Zm00001d017254_P002
Zm00001d024507_P001
Zm00001d025514_P001
Zm00001d032025_P001
Zm00001d034137_P001
Zm00001d039321_P008
Zm00001d042917_P001
Zm00001d049494_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23070.1	Zm00001d024507_P001	AT1G64860.1	22111690
AT2G23070.1	Zm00001d049494_P001	AT1G64860.1	22111690
AT2G23070.1	Zm00001d032025_P001	AT2G23070.1	22111690
AT2G23070.1	Zm00001d034137_P001	AT2G23070.1	22111690
AT2G23070.1	Zm00001d012810_P003	AT2G36990.1	22111690
AT2G23070.1	Zm00001d003549_P001	AT3G14180.1	21798944
AT2G23070.1	Zm00001d010753_P001	AT3G14180.1	21798944
AT2G23070.1	Zm00001d016876_P001	AT3G14180.1	21798944
AT2G23070.1	Zm00001d025514_P001	AT3G14180.1	21798944
AT2G23070.1	Zm00001d042917_P001	AT3G14180.1	21798944
AT2G23070.1	Zm00001d017254_P002	AT5G58720.1	21798944
AT2G23070.1	Zm00001d039321_P008	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37490	Sorghum	mitochondrion	95.41	91.0
Os03t0763000-01	Rice	plastid	84.18	80.88
TraesCS5A01G400900.1	Wheat	mitochondrion, plastid	79.59	75.73
TraesCS5D01G411100.1	Wheat	mitochondrion	79.34	75.3
TraesCS5B01G405700.1	Wheat	mitochondrion, plastid	79.34	75.3
KRH04448	Soybean	nucleus	64.54	72.91
Zm00001d007951_P001	Maize	cytosol, nucleus	61.22	72.29
CDX76880	Canola	cytosol, mitochondrion	63.01	71.18
HORVU5Hr1G097400.2	Barley	cytosol, mitochondrion, nucleus, plastid	77.55	71.03
Zm00001d013217_P001	Maize	cytosol	63.27	64.75
Zm00001d034125_P002	Maize	mitochondrion, plastid	63.01	64.16
GSMUA_Achr6P34710_001	Banana	golgi, plasma membrane, vacuole	65.31	63.52
KRH58078	Soybean	cytosol	3.06	63.16
KRH58076	Soybean	endoplasmic reticulum	63.01	63.01
CDY38928	Canola	plastid	63.78	62.34
Bra032182.1-P	Field mustard	plastid	63.78	62.34
Zm00001d018669_P004	Maize	cytosol	58.93	61.44
VIT_07s0129g00270.t01	Wine grape	mitochondrion	66.33	61.32
Bra039942.1-P	Field mustard	plastid	65.31	60.95
CDX89544	Canola	plastid	64.8	60.91
CDY49445	Canola	plastid	65.31	60.81
Solyc02g064700.2.1	Tomato	plastid	65.82	60.42
AT2G23070.1	Thale cress	plastid	66.33	60.19
HORVU4Hr1G030100.1	Barley	cytosol	14.03	59.78
Zm00001d032025_P001	Maize	mitochondrion	29.59	58.59
GSMUA_Achr9P09590_001	Banana	mitochondrion, plastid	65.05	58.35
Zm00001d044362_P001	Maize	extracellular, golgi	8.42	30.84
Zm00001d040263_P003	Maize	cytosol	27.55	26.47
Zm00001d008357_P002	Maize	cytosol	27.55	25.59
Zm00001d016188_P002	Maize	cytosol	26.53	25.24
Zm00001d008893_P001	Maize	cytosol	26.02	25.12
Zm00001d024729_P001	Maize	plastid	25.51	24.39
Zm00001d053548_P001	Maize	cytosol	26.28	24.35
Zm00001d039730_P001	Maize	cytosol	19.64	24.14
Zm00001d009055_P001	Maize	cytosol	25.0	24.14
Zm00001d037010_P003	Maize	cytosol	24.74	24.07
Zm00001d039407_P001	Maize	cytosol	25.77	23.54
Zm00001d048564_P003	Maize	cytosol, mitochondrion	26.02	21.7
Zm00001d029664_P001	Maize	cytosol, mitochondrion	25.77	21.35
Zm00001d053206_P001	Maize	cytosol	17.35	19.6
Zm00001d006088_P001	Maize	cytosol	9.95	19.21
Zm00001d012869_P005	Maize	mitochondrion	26.28	9.57
Zm00001d028053_P001	Maize	mitochondrion	1.53	5.04

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	UniProt:A0A1D6L5Q4	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	ProteinID:ONM09635.1	PFAM:PF00069
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24054	PANTHER:PTHR24054:SF33	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0008424492	EnsemblPlantsGene:Zm00001d034137
EnsemblPlants:Zm00001d034137_P001	EnsemblPlants:Zm00001d034137_T001	SEG:seg	:	:	:

Description

Casein kinase II subunit alpha-4 chloroplastic

Coordinates

chr1:+:284854743..284866468

Molecular Weight (calculated)

44898.0 Da

IEP (calculated)

9.886

GRAVY (calculated)

-0.522

Length

392 amino acids

Sequence
(BLAST)

001: MAWGALRSRV LPLPAPAATA APHGLFLRFL LSTAVPHHGH HHRRRRLAPT AYAAAAAAAA EAPLPMTPRF GRATRQPGGA ASVARVYADA NAQRPKEYWD
101: YESLDIQWGK QDGYEVLRKV GRGKYSEVFE GFRAGSDERC VIKILKPVKK KKIKREIKIL QNLYGGPNIV KLLDIVRDDE SKTPSLIFEH VNNTDFKALD
201: YCHSRGIMHR DVKPHNVMID HEKRQLRLID WGLAEFYHPK MEYNARVASR CYKGPELLVD LLDYDYSLDL WSLGCMFAAM IFRVDPFFSG QDNYDQLVKI
301: AEVLGTGDLY NYLEKYGLQL DPQLERLIGR HNRKPWPKFV NARNRHLATP EAIDLVDKLL RYDHQKRPTA KETMAHPYFN PVRSPESKTN SQ

Best Arabidopsis Sequence Match ( AT2G23070.1 )
(BLAST)

001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ

Arabidopsis Description

CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.