CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDX75751
CDX76880
CDX79708
CDX89544
CDY02832
CDY18468
CDY32688
CDY33246
CDY38928
CDY39099
CDY39101
CDY49445
CDY52962
CDY56127
CDY61025
CDY66142

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23070.1	CDY52962	AT1G64860.1	22111690
AT2G23070.1	CDY56127	AT1G64860.1	22111690
AT2G23070.1	CDX76880	AT2G23070.1	22111690
AT2G23070.1	CDX89544	AT2G23070.1	22111690
AT2G23070.1	CDY38928	AT2G23070.1	22111690
AT2G23070.1	CDY49445	AT2G23070.1	22111690
AT2G23070.1	CDX79708	AT2G36990.1	22111690
AT2G23070.1	CDY18468	AT2G36990.1	22111690
AT2G23070.1	CDY66142	AT2G36990.1	22111690
AT2G23070.1	CDX75751	AT3G14180.1	21798944
AT2G23070.1	CDY33246	AT3G14180.1	21798944
AT2G23070.1	CDY39099	AT3G14180.1	21798944
AT2G23070.1	CDY39101	AT3G14180.1	21798944
AT2G23070.1	CDX71154	AT5G58720.1	21798944
AT2G23070.1	CDY02832	AT5G58720.1	21798944
AT2G23070.1	CDY32688	AT5G58720.1	21798944
AT2G23070.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04448	Soybean	nucleus	90.78	90.78
CDX83104	Canola	cytosol	81.27	85.71
CDY57359	Canola	cytosol	81.84	85.54
CDY30613	Canola	cytosol	81.84	85.29
CDY57680	Canola	cytosol	81.56	84.98
CDY38928	Canola	plastid	95.1	82.29
CDY70654	Canola	cytosol	40.63	81.98
Bra039942.1-P	Field mustard	plastid	98.85	81.67
CDY49445	Canola	plastid	98.85	81.47
CDX89544	Canola	plastid	97.12	80.82
AT2G23070.1	Thale cress	plastid	96.54	77.55
CDX98044	Canola	cytosol	35.45	76.88
HORVU4Hr1G030100.1	Barley	cytosol	20.17	76.09
KRH58076	Soybean	endoplasmic reticulum	85.88	76.02
Solyc02g064700.2.1	Tomato	plastid	92.22	74.94
GSMUA_Achr6P34710_001	Banana	golgi, plasma membrane, vacuole	86.17	74.19
VIT_07s0129g00270.t01	Wine grape	mitochondrion	90.2	73.82
KRH58078	Soybean	cytosol	4.03	73.68
GSMUA_Achr9P09590_001	Banana	mitochondrion, plastid	83.57	66.36
KXG37490	Sorghum	mitochondrion	76.37	64.48
Os03t0763000-01	Rice	plastid	74.93	63.73
Zm00001d034137_P001	Maize	plastid	71.18	63.01
TraesCS5B01G405700.1	Wheat	mitochondrion, plastid	73.2	61.5
TraesCS5A01G400900.1	Wheat	mitochondrion, plastid	72.91	61.41
CDY67469	Canola	vacuole	51.59	61.09
TraesCS5D01G411100.1	Wheat	mitochondrion	72.62	61.02
CDY15289	Canola	vacuole	47.55	59.78
HORVU5Hr1G097400.2	Barley	cytosol, mitochondrion, nucleus, plastid	72.91	59.11
CDY71648	Canola	plastid	27.38	59.01
Zm00001d032025_P001	Maize	mitochondrion	33.43	58.59
CDY29766	Canola	golgi, plasma membrane	59.65	58.47
CDY25489	Canola	golgi, plasma membrane	51.59	36.83
CDY10766	Canola	extracellular, plasma membrane, vacuole	18.16	28.12
CDY69647	Canola	cytosol	26.22	26.76
CDY66894	Canola	cytosol	28.53	26.47
CDY34051	Canola	cytosol	28.24	25.79
CDY70859	Canola	cytosol	27.38	25.4
CDX78886	Canola	cytosol	27.38	25.4
CDY64921	Canola	cytosol	27.38	25.4
CDX99437	Canola	cytosol	27.67	25.2
CDX70574	Canola	cytosol	29.68	25.18
CDX78587	Canola	cytosol	29.68	25.12
CDX80585	Canola	cytosol	28.82	24.88
CDX88238	Canola	cytosol	28.82	24.81
CDX97773	Canola	cytosol	29.11	24.63
CDY19757	Canola	cytosol	28.82	24.63
CDX87033	Canola	cytosol	28.82	24.63
CDX74129	Canola	cytosol	28.82	24.33
CDY49981	Canola	cytosol	28.82	24.33
CDY18828	Canola	cytosol	28.24	24.26
CDY05202	Canola	cytosol	28.53	24.15
CDY72370	Canola	cytosol	7.2	23.58
CDY52692	Canola	cytosol, mitochondrion, nucleus	7.49	23.01
CDX93471	Canola	cytosol	26.8	22.3
CDX94939	Canola	cytosol	26.8	22.3
CDY65729	Canola	plastid	26.8	22.09
CDY31060	Canola	plastid	26.8	22.09
CDX91895	Canola	mitochondrion	29.39	21.89
CDY07202	Canola	mitochondrion	29.68	21.87
CDX74346	Canola	cytosol, mitochondrion	29.39	21.79
CDY51144	Canola	mitochondrion	29.68	21.55
CDY45686	Canola	mitochondrion	25.94	20.83
CDX67856	Canola	mitochondrion	25.94	20.83
CDY65303	Canola	mitochondrion	26.22	20.82
CDY52332	Canola	mitochondrion	25.94	20.59
CDY62551	Canola	cytosol	15.56	20.45
CDX77348	Canola	plastid	10.09	20.0
CDY27737	Canola	cytosol	28.53	19.26
CDX78658	Canola	cytosol, nucleus, peroxisome	26.51	16.2

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	GO:A0A078CJ05	EnsemblPlants:CDX76880	ProteinID:CDX76880
ProteinID:CDX76880.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00127399001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24054	PANTHER:PTHR24054:SF33
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EE9BB2
SEG:seg	:	:	:	:	:

Description

BnaC08g34660D

Coordinates

chrLK031808:+:1731573..1734457

Molecular Weight (calculated)

40625.8 Da

IEP (calculated)

9.372

GRAVY (calculated)

-0.567

Length

347 amino acids

Sequence
(BLAST)

001: MAQKIGKSIR RAGAPSKARV YTDVNVVRPK EYWDYESLAV QWGAQDDYEV VRKVGRGKYS EVFEGIHATD DEKCVIKILK PVKKKKIKRE IKILQNLCGG
101: PNIVKLLDIV RDQQSKTPSL IFEHVNNKDF KVLYPTLSDY DVRYYIYELL KALDFCHSRG IMHRDVKPHN VMIDHEQRKL RLIDWGLAEF YHPGKEYNVR
201: VASRYFKGPE LLVDLQDYDY SLDLWSLGCM FAGMIFRKEP FFYGHDNYDQ LVKIAKVLGT DELNTYLNRY RIELDPNLAS LVGRHSRKPW SKFINSENQH
301: LAVPEAVDFV DKLLKYDHQE RPTAKEAMAH PYFYPIRNAE SSRTPRG

Best Arabidopsis Sequence Match ( AT2G23070.1 )
(BLAST)

001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ

Arabidopsis Description

CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.