Factsheet for GSMUA_Achr6P34710_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 2
cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P10700_001
GSMUA_Achr3P05880_001
GSMUA_Achr4P30300_001
GSMUA_Achr6P34710_001
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P09590_001
GSMUA_Achr9P14340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23070.1	GSMUA_Achr11P...	AT1G64860.1	22111690
AT2G23070.1	GSMUA_Achr1P10700_001	AT1G64860.1	22111690
AT2G23070.1	GSMUA_Achr6P34710_001	AT2G23070.1	22111690
AT2G23070.1	GSMUA_Achr9P09590_001	AT2G23070.1	22111690
AT2G23070.1	GSMUA_Achr11P...	AT2G36990.1	22111690
AT2G23070.1	GSMUA_Achr4P30300_001	AT2G36990.1	22111690
AT2G23070.1	GSMUA_Achr3P05880_001	AT3G14180.1	21798944
AT2G23070.1	GSMUA_Achr8P23650_001	AT3G14180.1	21798944
AT2G23070.1	GSMUA_Achr9P14340_001	AT3G14180.1	21798944
AT2G23070.1	GSMUA_Achr7P14310_001	AT5G58720.1	21798944
AT2G23070.1	GSMUA_Achr7P14320_001	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04448	Soybean	nucleus	76.43	88.76
GSMUA_Achr5P01690_001	Banana	cytosol	72.46	87.69
GSMUA_Achr10P...	Banana	cytosol	71.46	86.49
GSMUA_Achr6P16850_001	Banana	cytosol	71.22	86.19
CDX76880	Canola	cytosol, mitochondrion	74.19	86.17
KRH58078	Soybean	cytosol	3.72	78.95
KRH58076	Soybean	endoplasmic reticulum	73.7	75.77
VIT_07s0129g00270.t01	Wine grape	mitochondrion	79.65	75.71
HORVU4Hr1G030100.1	Barley	cytosol	17.12	75.0
Bra032182.1-P	Field mustard	plastid	74.44	74.81
CDY38928	Canola	plastid	74.44	74.81
Solyc02g064700.2.1	Tomato	plastid	78.66	74.24
CDX89544	Canola	plastid	75.68	73.14
GSMUA_Achr9P09590_001	Banana	mitochondrion, plastid	78.66	72.54
Bra039942.1-P	Field mustard	plastid	75.43	72.38
CDY49445	Canola	plastid	75.43	72.21
AT2G23070.1	Thale cress	plastid	76.43	71.3
KXG37490	Sorghum	mitochondrion	67.99	66.67
Os03t0763000-01	Rice	plastid	66.5	65.69
Zm00001d034137_P001	Maize	plastid	63.52	65.31
TraesCS5B01G405700.1	Wheat	mitochondrion, plastid	64.52	62.95
TraesCS5A01G400900.1	Wheat	mitochondrion, plastid	64.27	62.86
TraesCS5D01G411100.1	Wheat	mitochondrion	64.02	62.47
HORVU5Hr1G097400.2	Barley	cytosol, mitochondrion, nucleus, plastid	64.02	60.28
Zm00001d032025_P001	Maize	mitochondrion	28.78	58.59
GSMUA_Achr10P...	Banana	cytosol	23.82	27.27
GSMUA_Achr7P25200_001	Banana	cytosol	24.81	27.17
GSMUA_AchrUn_...	Banana	cytosol	26.55	26.16
GSMUA_Achr4P02690_001	Banana	cytosol	26.3	26.11
GSMUA_Achr4P15220_001	Banana	cytosol	26.55	26.1
GSMUA_Achr11P...	Banana	cytosol	26.3	25.92
GSMUA_Achr8P27330_001	Banana	cytosol	26.3	25.73
GSMUA_Achr11P...	Banana	cytosol	26.05	25.67
GSMUA_Achr11P...	Banana	cytosol	26.05	25.67
GSMUA_Achr3P31520_001	Banana	cytosol	25.56	25.43
GSMUA_Achr5P20950_001	Banana	cytosol	25.56	25.43
GSMUA_Achr11P...	Banana	cytosol	25.81	25.43
GSMUA_Achr3P15420_001	Banana	cytosol, plastid	25.81	24.82
GSMUA_Achr9P06360_001	Banana	plastid	25.31	24.76
GSMUA_Achr1P12960_001	Banana	cytosol	25.06	24.51
GSMUA_Achr4P16320_001	Banana	cytosol, mitochondrion	25.56	24.35
GSMUA_Achr8P00060_001	Banana	cytosol	27.3	23.35
GSMUA_Achr3P18230_001	Banana	cytosol, mitochondrion	26.55	22.77
GSMUA_Achr5P13650_001	Banana	cytosol	26.05	22.29

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr6G34710_001	EnsemblPlants:GSMUA_Achr6P34710_001	EnsemblPlants:GSMUA_Achr6T34710_001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0TCR4
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24054	PANTHER:PTHR24054:SF33
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00029610EA
SEG:seg	:	:	:	:	:

Description

Casein kinase II subunit alpha-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G34710_001]

Coordinates

chr6:-:33192060..33200278

Molecular Weight (calculated)

46891.7 Da

IEP (calculated)

9.127

GRAVY (calculated)

-0.399

Length

403 amino acids

Sequence
(BLAST)

001: MGISVHGVLR ILHWLFSILT IIQICGRRPV FLEFLKTTSM DNLNAICCRL RPSAAGALAQ KIGKAVRSPG APSRARVYAD INVHRPKDYW DYESLTVQWG
101: EQDDYEVVRK VGRGKYSEVF EGVRATDKEK CIIKILKPVK KKKIKREIKI LQNLCGGSNI VKLLDIVRDQ QSKTPSLIFE YVNNTDFKVL YPTLSDYDIR
201: YYIYELLKAL DYCHSQGIMH RDVKPHNVMI DHQQRKLRLI DWGLAEFYHP EKEYNVRVAS RYFKGPELLV DLQDYDYSLD MWSLGCMFAG MIFRKEPFFY
301: GHDNYDQLVK IAKVLGTDEL NACLKKYQLE LDPQLEALVG RHSRKPWTRF INADNQHVAV PEAVDFVDKL LRYDHQERPT AKEAMAHPYF NPVRSPESSR
401: THA

Best Arabidopsis Sequence Match ( AT2G23070.1 )
(BLAST)

001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ

Arabidopsis Description

CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.