Factsheet for GSMUA_Achr6P16850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P06360_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P17850_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23080.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT2G23080.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT2G23080.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592
AT5G67380.1	GSMUA_Achr10P...	AT2G46830.1	14978263
AT5G67380.1	GSMUA_Achr1P06360_001	AT2G46830.1	14978263
AT5G67380.1	GSMUA_Achr10P...	AT2G46830.1	9724822
AT5G67380.1	GSMUA_Achr1P06360_001	AT2G46830.1	9724822
AT5G67380.1	GSMUA_Achr4P17850_001	AT3G60250.1	10535927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28388	Soybean	cytosol	97.0	97.0
GSMUA_Achr10P...	Banana	cytosol	97.0	97.0
KRH77093	Soybean	nucleus	96.7	96.7
GSMUA_Achr5P01690_001	Banana	cytosol	95.8	95.8
VIT_18s0001g09320.t01	Wine grape	cytosol	94.89	94.89
Solyc03g044140.2.1	Tomato	cytosol, nucleus	94.29	94.29
PGSC0003DMT400064191	Potato	cytosol	93.99	93.99
Solyc02g092640.2.1	Tomato	cytosol, nucleus	93.69	93.69
Bra029986.1-P	Field mustard	cytosol	91.89	93.01
CDX83104	Canola	cytosol	91.89	93.01
CDY57680	Canola	cytosol	92.79	92.79
CDY30613	Canola	cytosol	92.79	92.79
CDY57359	Canola	cytosol	92.49	92.77
CDY70654	Canola	cytosol	47.75	92.44
AT2G23080.1	Thale cress	cytosol	91.29	91.29
Os03t0207300-01	Rice	cytosol	89.19	89.46
TraesCS4A01G049900.1	Wheat	cytosol	88.29	88.55
TraesCS4D01G254600.1	Wheat	cytosol	87.69	87.95
TraesCS4B01G254800.1	Wheat	cytosol	86.79	87.84
HORVU4Hr1G069390.1	Barley	cytosol	87.39	87.65
KRH04471	Soybean	nucleus	96.7	80.9
Bra036806.1-P	Field mustard	cytosol	81.38	80.42
VIT_07s0129g00410.t01	Wine grape	golgi, plasma membrane	96.7	79.51
Bra036044.1-P	Field mustard	plasma membrane	92.79	79.43
KRH58068	Soybean	mitochondrion	96.7	78.35
CDX98044	Canola	cytosol	37.24	77.5
AT3G50000.1	Thale cress	golgi, plasma membrane, vacuole	93.69	77.42
AT5G67380.1	Thale cress	golgi, plasma membrane	93.39	76.04
Bra031829.1-P	Field mustard	cytosol	60.96	74.09
GSMUA_Achr6P34710_001	Banana	golgi, plasma membrane, vacuole	86.19	71.22
CDY71648	Canola	plastid	32.13	66.46
CDY67469	Canola	vacuole	56.76	64.51
GSMUA_Achr9P09590_001	Banana	mitochondrion, plastid	84.08	64.07
CDY15289	Canola	vacuole	51.35	61.96
CDY29766	Canola	golgi, plasma membrane	64.26	60.45
CDY25489	Canola	golgi, plasma membrane	57.96	39.71
GSMUA_Achr7P25200_001	Banana	cytosol	31.23	28.26
GSMUA_Achr10P...	Banana	cytosol	29.13	27.56
GSMUA_Achr4P02690_001	Banana	cytosol	31.83	26.11
GSMUA_Achr11P...	Banana	cytosol	31.83	25.92
GSMUA_Achr11P...	Banana	cytosol	31.83	25.92
GSMUA_Achr4P15220_001	Banana	cytosol	31.83	25.85
GSMUA_Achr8P27330_001	Banana	cytosol	31.83	25.73
GSMUA_Achr3P31520_001	Banana	cytosol	31.23	25.68
GSMUA_AchrUn_...	Banana	cytosol	31.53	25.67
GSMUA_Achr3P15420_001	Banana	cytosol, plastid	31.83	25.3
GSMUA_Achr5P20950_001	Banana	cytosol	30.63	25.19
GSMUA_Achr11P...	Banana	cytosol	30.93	25.18
GSMUA_Achr11P...	Banana	cytosol	30.93	25.18
GSMUA_Achr4P16320_001	Banana	cytosol, mitochondrion	31.83	25.06
GSMUA_Achr9P06360_001	Banana	plastid	30.93	25.0
GSMUA_Achr1P12960_001	Banana	cytosol	30.93	25.0
GSMUA_Achr8P00060_001	Banana	cytosol	31.53	22.29
GSMUA_Achr3P18230_001	Banana	cytosol, mitochondrion	30.63	21.7
GSMUA_Achr5P13650_001	Banana	cytosol	29.73	21.02

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr6G16850_001	EnsemblPlants:GSMUA_Achr6P16850_001	EnsemblPlants:GSMUA_Achr6T16850_001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M0T7N3
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24054	PANTHER:PTHR24054:SF33
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002953D60
SEG:seg	:	:	:	:	:

Description

Casein kinase II subunit alpha-2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16850_001]

Coordinates

chr6:-:11242802..11251384

Molecular Weight (calculated)

39425.3 Da

IEP (calculated)

8.502

GRAVY (calculated)

-0.546

Length

333 amino acids

Sequence
(BLAST)

001: MSKARVYTDV NVLRPKDYWD YESLTVQWGN QDDYEVVRKV GRGKYSEVFE GINVTNNERC IIKILKPVKK KKIKREIKIL QNICGGPNIV KLFDIVRDQH
101: SKTPSLIFEY VNSTDFKVLY PTLTDYDIRY YIYELLKALD YCHSQGIMHR DVKPHNVMID HELRKLRLID WGLAEFYHPG KEYNVRVASR YFKGPELLVD
201: LQDYDYSLDM WSLGCMFAGM IFRKEPFFYG HDNHDQLVKI AKVLGTDELN AYLNKYRLEL DPQLDALVGR HSRKPWSKFI NADNQHLVSP EAIDFLDKLL
301: QYDHQDRLTA REAMAHPYFH QVRAAENSRM RTQ

Best Arabidopsis Sequence Match ( AT3G50000.1 )
(BLAST)

001: MHLIFFFSYF LRRYLLLLCA ILILRAPLAH SLIPPLTCVN TGTVESDVTG IRFDRCLDTD SLAKISLSTV MSKARVYTDV NVIRPKDYWD YESLNVQWGE
101: QDDYEVVRKV GRGKYSEVFE GINMNNNEKC IIKILKPVKK KKIRREIKIL QNLCGGPNIV KLLDVVRDQH SKTPSLIFEY VNSTDFKVLY PTLTDYDIRY
201: YIYELLKALD FCHSQGIMHR DVKPHNVMID HELRKLRLID WGLAEFYHPG KEYNVRVASR YFKGPELLVD LQDYDYSLDM WSLGCMFAGM IFRKEPFFYG
301: HDNQDQLVKI AKVLGTDELN AYLNKYQLEL DTQLEALVGR HSRKPWSKFI NADNRHLVSP EAIDYLDKLL RYDHQDRLTA KEAMAHPYFA QVRAAESSRM
401: RTQ

Arabidopsis Description

CKA2Casein kinase II subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08466]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.