Factsheet for GSMUA_Achr4P17850_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
endoplasmic reticulum 3
extracellular 3
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P06360_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60250.1	GSMUA_Achr10P...	AT2G46830.1	10535927
AT3G60250.1	GSMUA_Achr1P06360_001	AT2G46830.1	10535927
AT3G60250.1	GSMUA_Achr10P...	AT2G46830.1	14978263
AT3G60250.1	GSMUA_Achr1P06360_001	AT2G46830.1	14978263
AT3G60250.1	GSMUA_Achr10P...	AT2G46830.1	9724822
AT3G60250.1	GSMUA_Achr1P06360_001	AT2G46830.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30080_001	Banana	cytosol	62.82	52.5
TraesCS2D01G242000.2	Wheat	cytosol	59.83	52.04
GSMUA_AchrUn_...	Banana	cytosol	61.97	51.79
TraesCS2A01G245100.1	Wheat	cytosol	59.83	51.66
Zm00001d021557_P001	Maize	cytosol	60.26	51.65
KXG36270	Sorghum	cytosol	60.26	51.27
GSMUA_Achr4P26360_001	Banana	cytosol	60.68	50.71
KRH57540	Soybean	nucleus	55.98	50.19
Os07t0495100-01	Rice	cytosol	61.11	49.65
EER91910	Sorghum	cytosol	55.56	49.62
KRH04253	Soybean	nucleus	55.13	48.86
GSMUA_Achr8P14950_001	Banana	cytosol	58.97	48.59
VIT_02s0012g00080.t01	Wine grape	cytosol	55.13	48.5
Bra003407.1-P	Field mustard	cytosol	55.13	48.31
CDX83421	Canola	cytosol	56.41	48.0
CDX95610	Canola	cytosol	56.41	48.0
Bra000359.1-P	Field mustard	cytosol	56.41	48.0
CDY64765	Canola	cytosol	54.7	47.94
CDX71824	Canola	cytosol	53.85	47.91
KRH04249	Soybean	nucleus	53.42	47.71
Bra007520.1-P	Field mustard	cytosol	53.42	47.53
CDY41181	Canola	cytosol	53.42	47.53
KRH57536	Soybean	cytosol	52.14	47.47
KRH77278	Soybean	nucleus	57.69	47.37
Bra004856.1-P	Field mustard	cytosol	52.99	47.33
Os10t0564900-01	Rice	cytosol	56.41	47.31
KRH28210	Soybean	nucleus	57.69	47.2
Solyc01g088740.2.1	Tomato	cytosol	57.69	47.2
PGSC0003DMT400004353	Potato	cytosol	58.55	47.08
TraesCS1B01G229200.1	Wheat	cytosol	55.13	46.91
TraesCSU01G007300.1	Wheat	cytosol	55.13	46.91
TraesCS1A01G215700.1	Wheat	cytosol	55.13	46.91
Solyc05g050680.2.1	Tomato	nucleus	56.84	46.67
HORVU1Hr1G055250.1	Barley	cytosol	54.7	46.55
CDX74677	Canola	cytosol	52.99	46.44
AT3G60250.1	Thale cress	cytosol	54.7	46.38
Zm00001d006440_P003	Maize	cytosol	59.83	46.36
CDY48249	Canola	cytosol	52.56	45.9
AT2G44680.1	Thale cress	cytosol	54.7	45.23
Zm00001d029978_P001	Maize	cytosol	42.31	45.0
TraesCS2D01G388200.1	Wheat	cytosol	52.56	44.4
TraesCS2B01G408900.1	Wheat	cytosol	52.56	44.4
TraesCS2A01G390500.1	Wheat	cytosol	52.56	44.4
HORVU2Hr1G092930.1	Barley	cytosol	52.56	44.4
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	47.86	44.27
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	47.86	44.09
GSMUA_Achr2P10400_001	Banana	cytosol	60.68	43.69
PGSC0003DMT400068359	Potato	cytosol	52.14	42.81
Solyc06g061000.2.1	Tomato	cytosol	52.14	42.66
OQU82060	Sorghum	cytosol	50.0	42.09
HORVU4Hr1G090280.3	Barley	cytosol	47.01	40.59
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	37.61	40.37
Zm00001d002778_P001	Maize	nucleus	37.18	36.25
PGSC0003DMT400018024	Potato	mitochondrion	47.44	35.92
GSMUA_Achr2P21300_001	Banana	cytosol	40.17	33.33
Zm00001d000052_P004	Maize	cytosol	41.03	33.22
GSMUA_Achr6P11870_001	Banana	cytosol, plastid	41.03	33.1
GSMUA_Achr4P17860_001	Banana	cytosol	8.55	11.36

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0019887	GO:GO:0030234	GO:GO:0045859	EnsemblPlantsGene:GSMUA_Achr4G17850_001	EnsemblPlants:GSMUA_Achr4P17850_001	EnsemblPlants:GSMUA_Achr4T17850_001
InterPro:IPR016149	UniProt:M0SPU8	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740
PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	TMHMM:TMhelix	UniParc:UPI0002948DDE	SEG:seg

Description

casein kinase II subunit beta-4, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G17850_001]

Coordinates

chr4:-:18180191..18182876

Molecular Weight (calculated)

27204.4 Da

IEP (calculated)

8.389

GRAVY (calculated)

0.073

Length

234 amino acids

Sequence
(BLAST)

001: MVIIDVIPFF IPYSISSLSY TMMNDRYCDN VVGENFDDHN RCELSNFIFL CLTVDHFHLI SILALLFFPL TLLFLLLRMC SQLKLFKFSQ LKMSAIDSRY
101: DLFTEEQNKL VEAAAEMLYG LIHVRYILTS KGMAAMLEKF KNYDFGRCPR VYCCGQPCLP VGQSDIPRSS TVKIYCPKCE DIYYPRSKYQ GNVDGAYFGT
201: TFPHLFLMTY GHLKLKKPSQ RYTPRVFGFK IHNP

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.