CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60250.1	EES13385	AT2G46830.1	10535927
AT3G60250.1	EES13385	AT2G46830.1	14978263
AT3G60250.1	EES13385	AT2G46830.1	9724822
AT4G17640.1	EES13385	AT2G46830.1	9724822
AT5G47080.1	EES13385	AT2G46830.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029978_P001	Maize	cytosol	75.95	90.45
Os10t0564900-01	Rice	cytosol	91.6	86.02
Solyc10g061940.1.1	Tomato	mitochondrion	37.79	84.62
HORVU1Hr1G055250.1	Barley	cytosol	85.88	81.82
TraesCSU01G007300.1	Wheat	cytosol	85.5	81.45
TraesCS1B01G229200.1	Wheat	cytosol	85.5	81.45
TraesCS1A01G215700.1	Wheat	cytosol	85.5	81.45
KRH57540	Soybean	nucleus	74.81	75.1
GSMUA_AchrUn_...	Banana	cytosol	79.39	74.29
KXG36270	Sorghum	cytosol	77.86	74.18
GSMUA_Achr4P26360_001	Banana	cytosol	78.63	73.57
KRH04253	Soybean	nucleus	73.28	72.73
VIT_02s0012g00080.t01	Wine grape	cytosol	73.66	72.56
GSMUA_Achr4P30080_001	Banana	cytosol	77.48	72.5
CDY64765	Canola	cytosol	73.28	71.91
Bra003407.1-P	Field mustard	cytosol	72.9	71.54
Bra007520.1-P	Field mustard	cytosol	70.99	70.72
CDY41181	Canola	cytosol	70.99	70.72
KRH77278	Soybean	nucleus	75.95	69.82
KRH28210	Soybean	nucleus	75.95	69.58
CDX71824	Canola	cytosol	69.47	69.2
CDX83421	Canola	cytosol	72.14	68.73
Bra000359.1-P	Field mustard	cytosol	72.14	68.73
CDX95610	Canola	cytosol	71.76	68.36
Solyc01g088740.2.1	Tomato	cytosol	74.43	68.18
KRH57536	Soybean	cytosol	66.79	68.09
Bra004856.1-P	Field mustard	cytosol	67.94	67.94
CDX74677	Canola	cytosol	69.08	67.79
Solyc05g050680.2.1	Tomato	nucleus	73.66	67.72
PGSC0003DMT400004353	Potato	cytosol	75.19	67.7
KRH04249	Soybean	nucleus	67.56	67.56
OQU82060	Sorghum	cytosol	70.61	66.55
Zm00001d000052_P004	Maize	cytosol	73.28	66.44
AT2G44680.1	Thale cress	cytosol	71.76	66.43
CDX78786	Canola	cytosol	70.99	66.43
CDY48249	Canola	cytosol	67.94	66.42
PGSC0003DMT400068359	Potato	cytosol	72.14	66.32
GSMUA_Achr8P14950_001	Banana	cytosol	71.76	66.2
AT3G60250.1	Thale cress	cytosol	69.47	65.94
Bra040171.1-P	Field mustard	cytosol	70.61	65.84
Solyc06g061000.2.1	Tomato	cytosol	71.76	65.73
AT5G47080.1	Thale cress	cytosol	71.76	65.51
Bra022101.1-P	Field mustard	cytosol	67.94	64.26
CDY28980	Canola	cytosol	67.56	63.9
CDY38414	Canola	cytosol	69.08	63.73
CDY40582	Canola	cytosol	66.79	63.41
GSMUA_Achr2P10400_001	Banana	cytosol	77.86	62.77
AT4G17640.1	Thale cress	cytosol	66.79	62.06
CDY09612	Canola	cytosol	66.79	61.4
CDX90462	Canola	cytosol	66.79	61.4
CDX77739	Canola	cytosol	56.11	59.04
VIT_15s0021g01020.t01	Wine grape	cytosol	66.03	56.54
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	49.62	55.56
CDY64781	Canola	cytosol	56.11	55.26
Bra025515.1-P	Field mustard	cytosol	56.49	55.02
CDY48948	Canola	cytosol	56.49	54.61
PGSC0003DMT400018024	Potato	mitochondrion	63.74	54.05
Bra025463.1-P	Field mustard	cytosol	54.96	51.43
Solyc10g061930.1.1	Tomato	nucleus	28.24	44.58
GSMUA_Achr4P17860_001	Banana	cytosol	29.01	43.18
Bra012652.1-P	Field mustard	cytosol	53.05	42.64

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	UniProt:C5WRG0	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like
InterPro:Casein_kinase_II_reg-sub	EnsemblPlants:EER91910	ProteinID:EER91910	ProteinID:EER91910.2	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859	InterPro:IPR016149
PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740	PANTHER:PTHR11740:SF5	SMART:SM01085
EnsemblPlantsGene:SORBI_3001G294200	SUPFAM:SSF57798	UniParc:UPI0001C80BA5	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:57222152..57227112

Molecular Weight (calculated)

29735.9 Da

IEP (calculated)

4.783

GRAVY (calculated)

-0.592

Length

262 amino acids

Sequence
(BLAST)

001: MDRKRIKDAL EKHLERSSPS TSRGGVVPKE RERLAAAGKL PASLGKAEKM SDGEEFETDS EDSDVSGSEG EDTSWISWFC TLRGNEFFCE IDEDYIQDDF
101: NLCGLSNQVP YYDYALDLIL DIESSNGDVF TEEQNELIES SAEMLYGLIH ARYILTSKGL AAMLEKFKNY DFGRCPRVYC CGQPCLPAGQ SDIPRSSTVK
201: IYCPKCEELN YPRSKYQGNI DGSYFGTTFP HLFLMTYPHL KPQKPLQQYT PRVFGFKLHK PS

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.