Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47080.1 | CDX80051 | AT2G46830.1 | 9724822 |
| AT5G47080.1 | CDX80052 | AT2G46830.1 | 9724822 |
| AT5G47080.1 | CDY41563 | AT2G46830.1 | 9724822 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022101.1-P | Field mustard | cytosol | 99.28 | 99.28 |
| CDY40582 | Canola | cytosol | 95.31 | 95.65 |
| CDX77739 | Canola | cytosol | 78.7 | 87.55 |
| AT5G47080.1 | Thale cress | cytosol | 90.25 | 87.11 |
| CDX90462 | Canola | cytosol | 77.62 | 75.44 |
| CDY09612 | Canola | cytosol | 76.9 | 74.74 |
| CDY38414 | Canola | cytosol | 74.73 | 72.89 |
| CDX78786 | Canola | cytosol | 73.29 | 72.5 |
| CDY41181 | Canola | cytosol | 68.23 | 71.86 |
| CDY64765 | Canola | cytosol | 68.95 | 71.54 |
| TraesCS2D01G388200.1 | Wheat | cytosol | 71.48 | 71.48 |
| TraesCS2B01G408900.1 | Wheat | cytosol | 71.48 | 71.48 |
| TraesCS2A01G390500.1 | Wheat | cytosol | 71.48 | 71.48 |
| HORVU2Hr1G092930.1 | Barley | cytosol | 71.48 | 71.48 |
| CDX71824 | Canola | cytosol | 67.15 | 70.72 |
| TraesCS2D01G242000.2 | Wheat | cytosol | 68.23 | 70.26 |
| TraesCS2A01G245100.1 | Wheat | cytosol | 68.23 | 69.74 |
| Zm00001d029978_P001 | Maize | cytosol | 55.23 | 69.55 |
| Zm00001d021557_P001 | Maize | cytosol | 68.23 | 69.23 |
| CDX83421 | Canola | cytosol | 68.23 | 68.73 |
| KXG36270 | Sorghum | cytosol | 67.87 | 68.36 |
| CDX95610 | Canola | cytosol | 67.51 | 68.0 |
| OQU82060 | Sorghum | cytosol | 67.87 | 67.63 |
| EER91910 | Sorghum | cytosol | 63.9 | 67.56 |
| Zm00001d002778_P001 | Maize | nucleus | 58.48 | 67.5 |
| TraesCS1A01G215700.1 | Wheat | cytosol | 66.43 | 66.91 |
| TraesCS1B01G229200.1 | Wheat | cytosol | 66.43 | 66.91 |
| TraesCSU01G007300.1 | Wheat | cytosol | 66.43 | 66.91 |
| HORVU1Hr1G055250.1 | Barley | cytosol | 66.06 | 66.55 |
| Os07t0495100-01 | Rice | cytosol | 67.87 | 65.28 |
| Os10t0564900-01 | Rice | cytosol | 65.7 | 65.23 |
| CDY48249 | Canola | cytosol | 62.45 | 64.55 |
| CDX74677 | Canola | cytosol | 62.09 | 64.42 |
| TraesCS4B01G379300.1 | Wheat | cytosol, mitochondrion | 49.46 | 62.84 |
| TraesCSU01G129600.1 | Wheat | cytosol, mitochondrion | 56.68 | 62.06 |
| TraesCS5A01G545600.3 | Wheat | cytosol, mitochondrion | 55.96 | 61.02 |
| Zm00001d006440_P003 | Maize | cytosol | 66.43 | 60.93 |
| CDY64781 | Canola | cytosol | 56.68 | 59.02 |
| CDY48948 | Canola | cytosol | 56.68 | 57.93 |
| HORVU4Hr1G090280.3 | Barley | cytosol | 56.32 | 57.56 |
| Zm00001d000052_P004 | Maize | cytosol | 52.35 | 50.17 |
Protein Annotations
| Gene3D:1.10.1820.10 | MapMan:18.4.3.9.2 | Gene3D:2.20.25.20 | GO:A0A078GR18 | UniProt:A0A078GR18 | EnsemblPlants:CDY28980 |
| ProteinID:CDY28980 | ProteinID:CDY28980.1 | InterPro:Casein_kin_II_reg-sub_N | InterPro:Casein_kinase_II_beta_like | InterPro:Casein_kinase_II_reg-sub | GO:GO:0003674 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005956 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019887 | GO:GO:0030234 | GO:GO:0045859 |
| EnsemblPlantsGene:GSBRNA2T00041698001 | InterPro:IPR016149 | PFAM:PF01214 | PRINTS:PR00472 | ScanProsite:PS01101 | PANTHER:PTHR11740 |
| PANTHER:PTHR11740:SF15 | SMART:SM01085 | SUPFAM:SSF57798 | UniParc:UPI0004EDCD0C | SEG:seg | : |
Description
BnaA02g24960DCasein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078GR18]
Coordinates
chrLK032228:+:525138..526946
Molecular Weight (calculated)
31232.4 Da
IEP (calculated)
5.372
GRAVY (calculated)
-0.593
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRERGTVGS RPEVVDRKRI NQAVERPSPS TSLQVNGKGK GTVTASAHSV KQPHDHRDSH SASLSKNNVS DDESDTDSEE ESDVSGSDTS WVSWFCNLKG
101: NEFFCEVDDD YIQDDFNLCG LSSVVPYYEY ALDLILDVES SHGEMFTEEQ NELIESAAEM LYGLIHARYI LTTKGLAAML DKYKNYDFGR CPRVYCCGQP
201: CLPVGQSDLP RSSTVKIYCP KCQDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGNLKPPK ATQNYVPRVF GFKLHKP
101: NEFFCEVDDD YIQDDFNLCG LSSVVPYYEY ALDLILDVES SHGEMFTEEQ NELIESAAEM LYGLIHARYI LTTKGLAAML DKYKNYDFGR CPRVYCCGQP
201: CLPVGQSDLP RSSTVKIYCP KCQDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGNLKPPK ATQNYVPRVF GFKLHKP
001: MYRDRGTVNS RPEVVDRKRI NDALERPSPS TSRQVNGKGK GTVTAATTTA NLIGKQQSNN INHRDSRSAS LSKNNTVSDD ESDTDSEESD VSGSDGEDTS
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP
Arabidopsis Description
CKB1Casein kinase II subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:P40228]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.