Factsheet for HORVU1Hr1G055250.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G070870.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60250.1	HORVU7Hr1G070870.2	AT2G46830.1	10535927
AT3G60250.1	HORVU7Hr1G070870.2	AT2G46830.1	14978263
AT3G60250.1	HORVU7Hr1G070870.2	AT2G46830.1	9724822
AT4G17640.1	HORVU7Hr1G070870.2	AT2G46830.1	9724822
AT5G47080.1	HORVU7Hr1G070870.2	AT2G46830.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G007300.1	Wheat	cytosol	99.27	99.27
TraesCS1B01G229200.1	Wheat	cytosol	99.27	99.27
TraesCS1A01G215700.1	Wheat	cytosol	99.27	99.27
Os10t0564900-01	Rice	cytosol	88.0	86.74
EER91910	Sorghum	cytosol	81.82	85.88
Solyc10g061940.1.1	Tomato	mitochondrion	36.36	85.47
Zm00001d029978_P001	Maize	cytosol	68.36	85.45
KRH57540	Soybean	nucleus	72.0	75.86
GSMUA_AchrUn_...	Banana	cytosol	76.36	75.0
GSMUA_Achr4P30080_001	Banana	cytosol	75.64	74.29
VIT_02s0012g00080.t01	Wine grape	cytosol	71.64	74.06
GSMUA_Achr4P26360_001	Banana	cytosol	75.27	73.93
KRH04253	Soybean	nucleus	70.55	73.48
HORVU2Hr1G092930.1	Barley	cytosol	72.36	71.84
Bra000359.1-P	Field mustard	cytosol	71.27	71.27
CDY64765	Canola	cytosol	69.09	71.16
Bra003407.1-P	Field mustard	cytosol	69.09	71.16
CDX83421	Canola	cytosol	70.91	70.91
Bra007520.1-P	Field mustard	cytosol	67.64	70.72
CDY41181	Canola	cytosol	67.64	70.72
KRH57536	Soybean	cytosol	65.82	70.43
KRH04249	Soybean	nucleus	66.91	70.23
CDX95610	Canola	cytosol	70.18	70.18
KRH77278	Soybean	nucleus	72.73	70.18
CDX71824	Canola	cytosol	66.91	69.96
KRH28210	Soybean	nucleus	72.73	69.93
Solyc05g050680.2.1	Tomato	nucleus	72.36	69.82
Solyc01g088740.2.1	Tomato	cytosol	72.36	69.58
PGSC0003DMT400004353	Potato	cytosol	73.09	69.07
CDX74677	Canola	cytosol	66.91	68.91
Bra004856.1-P	Field mustard	cytosol	65.45	68.7
GSMUA_Achr8P14950_001	Banana	cytosol	70.91	68.66
CDY48249	Canola	cytosol	66.55	68.28
AT2G44680.1	Thale cress	cytosol	69.82	67.84
PGSC0003DMT400068359	Potato	cytosol	70.18	67.72
Solyc06g061000.2.1	Tomato	cytosol	70.18	67.48
AT3G60250.1	Thale cress	cytosol	67.27	67.03
AT5G47080.1	Thale cress	cytosol	69.82	66.9
CDX78786	Canola	cytosol	67.64	66.43
Bra022101.1-P	Field mustard	cytosol	66.91	66.43
CDY28980	Canola	cytosol	66.55	66.06
Bra040171.1-P	Field mustard	cytosol	67.27	65.84
CDY40582	Canola	cytosol	65.45	65.22
CDY38414	Canola	cytosol	66.55	64.44
CDY09612	Canola	cytosol	66.18	63.86
CDX90462	Canola	cytosol	66.18	63.86
GSMUA_Achr2P10400_001	Banana	cytosol	75.27	63.69
AT4G17640.1	Thale cress	cytosol	65.09	63.48
CDX77739	Canola	cytosol	56.36	62.25
HORVU4Hr1G090280.3	Barley	cytosol	61.09	61.99
Zm00001d000052_P004	Maize	cytosol	65.09	61.94
CDY64781	Canola	cytosol	55.27	57.14
VIT_15s0021g01020.t01	Wine grape	cytosol	62.55	56.21
Bra025515.1-P	Field mustard	cytosol	54.55	55.76
CDY48948	Canola	cytosol	54.55	55.35
PGSC0003DMT400018024	Potato	mitochondrion	61.82	55.02
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	46.55	54.7
Bra025463.1-P	Field mustard	cytosol	53.82	52.86
Solyc10g061930.1.1	Tomato	nucleus	29.45	48.8
GSMUA_Achr4P17860_001	Banana	cytosol	28.36	44.32
Bra012652.1-P	Field mustard	cytosol	52.36	44.17

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	UniProt:A0A287FP69	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like
InterPro:Casein_kinase_II_reg-sub	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887
GO:GO:0030234	GO:GO:0045859	EnsemblPlantsGene:HORVU1Hr1G055250	EnsemblPlants:HORVU1Hr1G055250.1	InterPro:IPR016149	PFAM:PF01214
PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740	PANTHER:PTHR11740:SF5	SMART:SM01085	SUPFAM:SSF57798
UniParc:UPI000B4724DF	SEG:seg	:	:	:	:

Description

Casein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A287FP69]

Coordinates

chrchr1H:-:405060885..405067380

Molecular Weight (calculated)

31074.4 Da

IEP (calculated)

4.874

GRAVY (calculated)

-0.566

Length

275 amino acids

Sequence
(BLAST)

001: MSGAAYRDRG FGGAAEMDRK RIKEALEKHT ERPSPSTSRG ASREKEMLAA GKITTQIGKV PKVSDVEEFE TDSEDSDVSG SEGEDTSWIS WFCSLRGNEF
101: FCEIDDDYIQ DDFNLCGLSN QVPYYDYALD LILDIESSNG DVFTEEQNEL IESSAEMLYG LIHARYILTS KGLAAMLEKF KNYDFGRCPR VYCCGQPCLP
201: AGQSDIPRSS TVKVFCPKCE DLHYPRSKYQ GNIDGAYFGT TFPHLFLMTY PHLKPQKPSQ QYVPRVFGFK LHKQS

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.