Factsheet for PGSC0003DMT400018024

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029394

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60250.1	PGSC0003DMT400029394	AT2G46830.1	10535927
AT3G60250.1	PGSC0003DMT400029394	AT2G46830.1	14978263
AT3G60250.1	PGSC0003DMT400029394	AT2G46830.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050680.2.1	Tomato	nucleus	68.61	74.39
Zm00001d029978_P001	Maize	cytosol	51.13	71.82
PGSC0003DMT400004353	Potato	cytosol	66.02	70.1
Bra007520.1-P	Field mustard	cytosol	59.22	69.58
CDY41181	Canola	cytosol	59.22	69.58
Bra003407.1-P	Field mustard	cytosol	59.87	69.29
CDX71824	Canola	cytosol	58.9	69.2
CDY64765	Canola	cytosol	59.55	68.91
AT2G44680.1	Thale cress	cytosol	63.11	68.9
Zm00001d002778_P001	Maize	nucleus	53.07	68.33
TraesCS2D01G242000.2	Wheat	cytosol	59.22	68.03
Zm00001d021557_P001	Maize	cytosol	59.87	67.77
TraesCS2A01G245100.1	Wheat	cytosol	58.9	67.16
KXG36270	Sorghum	cytosol	59.55	66.91
Bra000359.1-P	Field mustard	cytosol	58.9	66.18
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	46.6	66.06
AT3G60250.1	Thale cress	cytosol	58.9	65.94
CDX83421	Canola	cytosol	58.58	65.82
Bra004856.1-P	Field mustard	cytosol	55.66	65.65
CDX74677	Canola	cytosol	56.63	65.54
CDY48249	Canola	cytosol	56.63	65.3
CDX95610	Canola	cytosol	57.93	65.09
Os07t0495100-01	Rice	cytosol	60.52	64.93
EER91910	Sorghum	cytosol	54.05	63.74
PGSC0003DMT400068359	Potato	cytosol	58.58	63.51
TraesCS2B01G408900.1	Wheat	cytosol	56.31	62.82
TraesCS2D01G388200.1	Wheat	cytosol	56.31	62.82
TraesCS2A01G390500.1	Wheat	cytosol	56.31	62.82
HORVU2Hr1G092930.1	Barley	cytosol	56.31	62.82
TraesCS1B01G229200.1	Wheat	cytosol	55.34	62.18
TraesCS1A01G215700.1	Wheat	cytosol	55.34	62.18
TraesCSU01G007300.1	Wheat	cytosol	55.34	62.18
HORVU1Hr1G055250.1	Barley	cytosol	55.02	61.82
Os10t0564900-01	Rice	cytosol	55.34	61.29
Zm00001d006440_P003	Maize	cytosol	59.55	60.93
OQU82060	Sorghum	cytosol	54.05	60.07
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	47.9	58.5
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	47.9	58.27
HORVU4Hr1G090280.3	Barley	cytosol	47.25	53.87
Zm00001d000052_P004	Maize	cytosol	48.87	52.25
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	35.92	47.44

Protein Annotations

Gene3D:1.10.1820.10	EntrezGene:102597719	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like
InterPro:Casein_kinase_II_reg-sub	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887
GO:GO:0030234	GO:GO:0045859	InterPro:IPR016149	UniProt:M1A9X3	PFAM:PF01214	EnsemblPlantsGene:PGSC0003DMG400007001
PGSC:PGSC0003DMG400007001	EnsemblPlants:PGSC0003DMT400018024	PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740	PANTHER:PTHR11740:SF15
SMART:SM01085	SUPFAM:SSF57798	UniParc:UPI0002948A1E	SEG:seg	:	:

Description

Protein kinase 2 beta chain [Source:PGSC_GENE;Acc:PGSC0003DMG400007001]

Coordinates

chr5:-:45119386..45126037

Molecular Weight (calculated)

34311.0 Da

IEP (calculated)

4.827

GRAVY (calculated)

-0.510

Length

309 amino acids

Sequence
(BLAST)

001: MYRDRGGGGG GGGGSSKSEM IGGPLDRKRI NDALDKHLEK LSPSTSRSLK DKAVPSTSTG GGGAGKSHFD HRNTNKDKCS DEESETDSEE SDVSGSDGDD
101: TSWISWFCNL RGNEFFCEVD DDYIQDDFNL CGLSSQVPYF DYALDLILDV ESSHGDMFTE EQNELVESAA EMLYGLIHVR YILTSKGIAA MLEKYKNYDF
201: GRCPRVYCSG QPCLPVGQSD IPRASTVKIY CPKCEDIYYP RSKYQGSEAE ELVIIMKHSS SLMKGNLANL SGEIYSRNIA MTAFVKLVSS HQFENYFIFA
301: HRRPLFVAL

Best Arabidopsis Sequence Match ( AT2G44680.3 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGS ILCSSVQKSF ILS

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.