Factsheet for Solyc05g050680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g005080.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60250.1	Solyc10g005080.2.1	AT2G46830.1	10535927
AT3G60250.1	Solyc10g005080.2.1	AT2G46830.1	14978263
AT3G60250.1	Solyc10g005080.2.1	AT2G46830.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g061940.1.1	Tomato	mitochondrion	38.95	94.87
TraesCS2D01G242000.2	Wheat	cytosol	74.74	79.18
Zm00001d021557_P001	Maize	cytosol	75.09	78.39
TraesCS2A01G245100.1	Wheat	cytosol	74.39	78.23
KXG36270	Sorghum	cytosol	75.09	77.82
Bra000359.1-P	Field mustard	cytosol	74.74	77.45
CDX83421	Canola	cytosol	74.39	77.09
Bra003407.1-P	Field mustard	cytosol	71.93	76.78
CDX95610	Canola	cytosol	73.68	76.36
Solyc01g088740.2.1	Tomato	cytosol	76.49	76.22
Os07t0495100-01	Rice	cytosol	76.84	76.04
CDY64765	Canola	cytosol	71.23	76.03
CDY41181	Canola	cytosol	69.82	75.67
Bra007520.1-P	Field mustard	cytosol	69.82	75.67
CDX71824	Canola	cytosol	68.42	74.14
EER91910	Sorghum	cytosol	67.72	73.66
AT3G60250.1	Thale cress	cytosol	70.53	72.83
AT2G44680.1	Thale cress	cytosol	72.28	72.79
TraesCS1B01G229200.1	Wheat	cytosol	70.18	72.73
TraesCS1A01G215700.1	Wheat	cytosol	70.18	72.73
TraesCSU01G007300.1	Wheat	cytosol	70.18	72.73
HORVU1Hr1G055250.1	Barley	cytosol	69.82	72.36
Zm00001d029978_P001	Maize	cytosol	55.79	72.27
Os10t0564900-01	Rice	cytosol	70.53	72.04
Solyc06g061000.2.1	Tomato	cytosol	71.93	71.68
TraesCS2D01G388200.1	Wheat	cytosol	69.12	71.12
TraesCS2B01G408900.1	Wheat	cytosol	69.12	71.12
TraesCS2A01G390500.1	Wheat	cytosol	69.12	71.12
HORVU2Hr1G092930.1	Barley	cytosol	69.12	71.12
Bra004856.1-P	Field mustard	cytosol	64.91	70.61
CDY48249	Canola	cytosol	66.32	70.52
CDX74677	Canola	cytosol	65.96	70.41
Zm00001d006440_P003	Maize	cytosol	73.68	69.54
PGSC0003DMT400018024	Potato	mitochondrion	74.39	68.61
OQU82060	Sorghum	cytosol	66.67	68.35
Zm00001d002778_P001	Maize	nucleus	56.84	67.5
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	59.3	66.54
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	58.95	66.4
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	50.18	65.6
HORVU4Hr1G090280.3	Barley	cytosol	58.95	61.99
Solyc10g061930.1.1	Tomato	nucleus	35.09	60.24
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	46.67	56.84
Zm00001d000052_P004	Maize	cytosol	54.74	53.98

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234
GO:GO:0045859	InterPro:IPR016149	UniProt:K4C1A0	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101
PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	EnsemblPlantsGene:Solyc05g050680.2	EnsemblPlants:Solyc05g050680.2.1
UniParc:UPI000276722A	SEG:seg	:	:	:	:

Description

Casein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:K4C1A0]

Coordinates

chr5:-:60797944..60807077

Molecular Weight (calculated)

31668.8 Da

IEP (calculated)

5.393

GRAVY (calculated)

-0.662

Length

285 amino acids

Sequence
(BLAST)

001: MYRDRGGGGG GGGGSSKSEM IGGPLDRKRI NDALDKHLEK LSPSTSRSLK DKAVPSTSTG GGGGAGKSHF DHRNTNKNKC SDEESETDSE ESDVSGSDGD
101: DTSWISWFCN LRGNEFFCEV DDDYIQDDFN LCGLSSQVPY YDYALDLILD VESSHEEQNE LVESAAEMLY GLIHVRYILT SKGIAAMLEK YKNYDFGRCP
201: RVYCSGQPCL PVGQSDIPRA STVKIYCPKC EDIYYPRSKY QGNIDGAYFG TTFPHLFLMT YGHLKPQKPT QNFVPRVFGF KIHKT

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.