Factsheet for TraesCSU01G129600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G299400.3
TraesCS7B01G188000.1
TraesCS7D01G295400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60250.1	TraesCS7A01G299400.3	AT2G46830.1	10535927
AT3G60250.1	TraesCS7B01G188000.1	AT2G46830.1	10535927
AT3G60250.1	TraesCS7D01G295400.1	AT2G46830.1	10535927
AT3G60250.1	TraesCS7A01G299400.3	AT2G46830.1	14978263
AT3G60250.1	TraesCS7B01G188000.1	AT2G46830.1	14978263
AT3G60250.1	TraesCS7D01G295400.1	AT2G46830.1	14978263
AT3G60250.1	TraesCS7A01G299400.3	AT2G46830.1	9724822
AT3G60250.1	TraesCS7B01G188000.1	AT2G46830.1	9724822
AT3G60250.1	TraesCS7D01G295400.1	AT2G46830.1	9724822
AT4G17640.1	TraesCS7A01G299400.3	AT2G46830.1	9724822
AT4G17640.1	TraesCS7B01G188000.1	AT2G46830.1	9724822
AT4G17640.1	TraesCS7D01G295400.1	AT2G46830.1	9724822
AT5G47080.1	TraesCS7A01G299400.3	AT2G46830.1	9724822
AT5G47080.1	TraesCS7B01G188000.1	AT2G46830.1	9724822
AT5G47080.1	TraesCS7D01G295400.1	AT2G46830.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	98.42	98.03
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	82.21	95.41
HORVU4Hr1G090280.3	Barley	cytosol	96.05	89.67
Solyc10g061940.1.1	Tomato	mitochondrion	36.36	78.63
KRH57540	Soybean	nucleus	69.17	67.05
KRH04253	Soybean	nucleus	67.59	64.77
CDY64765	Canola	cytosol	66.4	62.92
Bra003407.1-P	Field mustard	cytosol	66.01	62.55
TraesCSU01G007300.1	Wheat	cytosol	67.98	62.55
VIT_02s0012g00080.t01	Wine grape	cytosol	65.61	62.41
Bra007520.1-P	Field mustard	cytosol	64.82	62.36
CDY41181	Canola	cytosol	64.82	62.36
CDX74677	Canola	cytosol	65.61	62.17
CDY48249	Canola	cytosol	65.61	61.94
Bra004856.1-P	Field mustard	cytosol	64.03	61.83
GSMUA_AchrUn_...	Banana	cytosol	68.38	61.79
Bra000359.1-P	Field mustard	cytosol	66.8	61.45
CDX83421	Canola	cytosol	66.8	61.45
CDX95610	Canola	cytosol	66.8	61.45
KRH77278	Soybean	nucleus	68.77	61.05
KRH28210	Soybean	nucleus	68.77	60.84
CDX71824	Canola	cytosol	63.24	60.84
GSMUA_Achr4P26360_001	Banana	cytosol	66.8	60.36
GSMUA_Achr4P30080_001	Banana	cytosol	66.4	60.0
AT2G44680.1	Thale cress	cytosol	66.8	59.72
KRH57536	Soybean	cytosol	60.47	59.53
KRH04249	Soybean	nucleus	61.26	59.16
AT3G60250.1	Thale cress	cytosol	64.43	59.06
Solyc05g050680.2.1	Tomato	nucleus	66.4	58.95
Solyc01g088740.2.1	Tomato	cytosol	66.01	58.39
PGSC0003DMT400004353	Potato	cytosol	66.4	57.73
CDX78786	Canola	cytosol	63.64	57.5
GSMUA_Achr8P14950_001	Banana	cytosol	64.03	57.04
Bra022101.1-P	Field mustard	cytosol	62.45	57.04
Bra040171.1-P	Field mustard	cytosol	63.24	56.94
PGSC0003DMT400068359	Potato	cytosol	64.03	56.84
CDY28980	Canola	cytosol	62.06	56.68
Solyc06g061000.2.1	Tomato	cytosol	64.03	56.64
CDY40582	Canola	cytosol	61.26	56.16
AT5G47080.1	Thale cress	cytosol	63.64	56.1
CDY38414	Canola	cytosol	62.85	55.99
AT4G17640.1	Thale cress	cytosol	58.89	52.84
CDY09612	Canola	cytosol	59.29	52.63
GSMUA_Achr2P10400_001	Banana	cytosol	66.8	52.0
CDX90462	Canola	cytosol	58.5	51.93
CDX77739	Canola	cytosol	49.41	50.2
CDY64781	Canola	cytosol	51.38	48.87
CDY48948	Canola	cytosol	51.38	47.97
PGSC0003DMT400018024	Potato	mitochondrion	58.5	47.9
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	44.27	47.86
Bra025515.1-P	Field mustard	cytosol	50.59	47.58
VIT_15s0021g01020.t01	Wine grape	cytosol	57.31	47.39
Bra025463.1-P	Field mustard	cytosol	50.59	45.71
Solyc10g061930.1.1	Tomato	nucleus	25.69	39.16
GSMUA_Achr4P17860_001	Banana	cytosol	24.9	35.8
Bra012652.1-P	Field mustard	cytosol	45.85	35.58

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234
InterPro:IPR016149	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740	PANTHER:PTHR11740:SF5
SMART:SM01085	SUPFAM:SSF57798	EnsemblPlantsGene:TraesCSU01G129600	EnsemblPlants:TraesCSU01G129600.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:110516554..110518968

Molecular Weight (calculated)

28272.4 Da

IEP (calculated)

6.390

GRAVY (calculated)

-0.533

Length

253 amino acids

Sequence
(BLAST)

001: MDRKRINDAL DRHLRAATER SSPSTSRGAK PKPPPAAAPK PKEQLDSDSS EGGSAGGSSE ADDTFWINWF CAMRGNEFFA EVDDDYIQDD FNLCGLSAQV
101: PYYDHALDLI LDLEPVQGDV FADDQNELIV ASAEMLYGLI HARYILTTKG LAAMLEKFKN CDFGRCPRVS CSGQPCLPMG QSDIPRSSTV KIYCPKCEDL
201: YYPRSKHQAN TDGAYFGTTF PHIFMMTHSQ LKPQKPAQQY VPRIFGFKVH KKT

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.