CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28210	Soybean	nucleus	100.0	99.65
KRH57540	Soybean	nucleus	80.7	88.12
KRH04253	Soybean	nucleus	78.95	85.23
TraesCS2D01G242000.2	Wheat	cytosol	75.09	79.55
Zm00001d021557_P001	Maize	cytosol	75.79	79.12
TraesCS2A01G245100.1	Wheat	cytosol	75.09	78.97
KRH57536	Soybean	cytosol	70.88	78.6
KRH04249	Soybean	nucleus	71.93	78.24
KXG36270	Sorghum	cytosol	75.44	78.18
EER91910	Sorghum	cytosol	69.82	75.95
Os07t0495100-01	Rice	cytosol	75.44	74.65
Os10t0564900-01	Rice	cytosol	72.63	74.19
Zm00001d029978_P001	Maize	cytosol	57.19	74.09
TraesCS2D01G388200.1	Wheat	cytosol	71.23	73.29
HORVU2Hr1G092930.1	Barley	cytosol	71.23	73.29
TraesCS2A01G390500.1	Wheat	cytosol	71.23	73.29
TraesCS2B01G408900.1	Wheat	cytosol	71.23	73.29
TraesCSU01G007300.1	Wheat	cytosol	70.53	73.09
TraesCS1B01G229200.1	Wheat	cytosol	70.53	73.09
TraesCS1A01G215700.1	Wheat	cytosol	70.53	73.09
HORVU1Hr1G055250.1	Barley	cytosol	70.18	72.73
OQU82060	Sorghum	cytosol	70.18	71.94
Zm00001d002778_P001	Maize	nucleus	58.95	70.0
Zm00001d006440_P003	Maize	cytosol	73.68	69.54
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	61.05	68.77
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	61.05	68.5
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	51.93	67.89
HORVU4Hr1G090280.3	Barley	cytosol	59.3	62.36
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	47.37	57.69
Zm00001d000052_P004	Maize	cytosol	55.79	55.02

Protein Annotations

Gene3D:1.10.1820.10	EntrezGene:100799304	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	EMBL:ACUP02000669	InterPro:Casein_kin_II_reg-sub_N
InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	EnsemblPlantsGene:GLYMA_01G203800	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859	UniProt:I1J9P7	InterPro:IPR016149
ProteinID:KRH77277.1	EnsemblPlants:KRH77278	ProteinID:KRH77278	ProteinID:KRH77278.1	PFAM:PF01214	PRINTS:PR00472
ScanProsite:PS01101	PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	UniParc:UPI00023372F6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:53680624..53683758

Molecular Weight (calculated)

31899.0 Da

IEP (calculated)

4.688

GRAVY (calculated)

-0.584

Length

285 amino acids

Sequence
(BLAST)

001: MYRERGGVGS KSEVTSVDRK RINDVLDKQL ERSSPSTSRA AAINGKDRSS SSLLAAAKDS RSASVTAPIS KNSNASDEES ETDSEESDVS GSDGDDTSWI
101: SWFCNLRGNE FFCEVDDDYI QDDFNLCGLS SQVPYYDYAL DLILDVESSH GDMFTEEQNE LIESAAEMLY GLIHARYILT SKGMAAMLDK YKNYDFGRCP
201: RVYCSGQPCI PVGQSDIPRS STVKIYCPRC EDIYYPRSKY QGNIDGAYFG TTFPHLFLMT YGQLKPQKPS QSYVPRVFGF KLHKP

Best Arabidopsis Sequence Match ( AT4G17640.1 )
(BLAST)

001: MYRERGMVGS KSEVVDRKRI NEIHDNRPSH SMSQPVNGKG KVTSTSVLMG KQQLHDKESS RSGSISKTNI SDAVDISDTD SEESEVSGSD GEDTSWISWF
101: CNLRGNEFFC EVDDDYIQDD FNLCGLSHQV PYYDYALDLI LDVESSHGEM FTEEQNELIE SAAEMLYGMI HARFILTSKG LASMLDKYKN YDFGRCPRVY
201: CCGQPCLPVG QSDIPRASTV KIYCPKCEDV YYPRSKYQGN IDGAYFGTTF PHLFLMTYGH LKPQKASQSY TQRVFGFKLH KP

Arabidopsis Description

CKB2Casein kinase II subunit beta-2 [Source:UniProtKB/Swiss-Prot;Acc:P40229]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.