Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d024546_P001 | |
| Zm00001d049543_P003 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029978_P001 | Maize | cytosol | 66.78 | 87.73 |
| EER91910 | Sorghum | cytosol | 66.44 | 73.28 |
| Os10t0564900-01 | Rice | cytosol | 66.78 | 69.18 |
| TraesCS1A01G215700.1 | Wheat | cytosol | 61.94 | 65.09 |
| TraesCS1B01G229200.1 | Wheat | cytosol | 61.94 | 65.09 |
| TraesCSU01G007300.1 | Wheat | cytosol | 61.94 | 65.09 |
| HORVU1Hr1G055250.1 | Barley | cytosol | 61.94 | 65.09 |
| Zm00001d002778_P001 | Maize | nucleus | 50.87 | 61.25 |
| GSMUA_Achr4P30080_001 | Banana | cytosol | 57.44 | 59.29 |
| KRH57540 | Soybean | nucleus | 53.29 | 59.0 |
| Zm00001d021557_P001 | Maize | cytosol | 55.71 | 58.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.09 | 58.93 |
| GSMUA_Achr4P26360_001 | Banana | cytosol | 57.09 | 58.93 |
| KRH04253 | Soybean | nucleus | 52.6 | 57.58 |
| VIT_02s0012g00080.t01 | Wine grape | cytosol | 52.94 | 57.52 |
| Bra003407.1-P | Field mustard | cytosol | 52.94 | 57.3 |
| CDY64765 | Canola | cytosol | 52.25 | 56.55 |
| Solyc10g061940.1.1 | Tomato | mitochondrion | 22.84 | 56.41 |
| Bra007520.1-P | Field mustard | cytosol | 50.87 | 55.89 |
| CDY41181 | Canola | cytosol | 50.87 | 55.89 |
| KRH77278 | Soybean | nucleus | 55.02 | 55.79 |
| KRH28210 | Soybean | nucleus | 55.02 | 55.59 |
| CDX71824 | Canola | cytosol | 50.17 | 55.13 |
| CDX74677 | Canola | cytosol | 50.87 | 55.06 |
| Bra004856.1-P | Field mustard | cytosol | 49.83 | 54.96 |
| KRH57536 | Soybean | cytosol | 48.79 | 54.86 |
| Solyc05g050680.2.1 | Tomato | nucleus | 53.98 | 54.74 |
| KRH04249 | Soybean | nucleus | 49.48 | 54.58 |
| Solyc01g088740.2.1 | Tomato | cytosol | 53.98 | 54.55 |
| Bra000359.1-P | Field mustard | cytosol | 51.9 | 54.55 |
| CDY48249 | Canola | cytosol | 50.52 | 54.48 |
| PGSC0003DMT400004353 | Potato | cytosol | 54.67 | 54.3 |
| CDX83421 | Canola | cytosol | 51.56 | 54.18 |
| AT5G47080.1 | Thale cress | cytosol | 53.29 | 53.66 |
| CDX95610 | Canola | cytosol | 50.87 | 53.45 |
| AT2G44680.1 | Thale cress | cytosol | 52.25 | 53.36 |
| PGSC0003DMT400068359 | Potato | cytosol | 52.25 | 52.98 |
| Zm00001d006440_P003 | Maize | cytosol | 55.36 | 52.98 |
| AT3G60250.1 | Thale cress | cytosol | 50.52 | 52.9 |
| GSMUA_Achr8P14950_001 | Banana | cytosol | 51.9 | 52.82 |
| Bra022101.1-P | Field mustard | cytosol | 50.52 | 52.71 |
| Solyc06g061000.2.1 | Tomato | cytosol | 51.9 | 52.45 |
| CDY28980 | Canola | cytosol | 50.17 | 52.35 |
| VIT_15s0021g01020.t01 | Wine grape | cytosol | 55.36 | 52.29 |
| CDY40582 | Canola | cytosol | 49.48 | 51.81 |
| CDY09612 | Canola | cytosol | 50.17 | 50.88 |
| CDX90462 | Canola | cytosol | 49.83 | 50.53 |
| AT4G17640.1 | Thale cress | cytosol | 49.13 | 50.35 |
| CDX78786 | Canola | cytosol | 48.44 | 50.0 |
| Bra040171.1-P | Field mustard | cytosol | 48.44 | 49.82 |
| GSMUA_Achr2P10400_001 | Banana | cytosol | 55.71 | 49.54 |
| CDY38414 | Canola | cytosol | 48.44 | 49.3 |
| PGSC0003DMT400018024 | Potato | mitochondrion | 52.25 | 48.87 |
| CDX77739 | Canola | cytosol | 41.52 | 48.19 |
| Solyc10g061930.1.1 | Tomato | nucleus | 25.61 | 44.58 |
| GSMUA_Achr4P17860_001 | Banana | cytosol | 26.99 | 44.32 |
| CDY64781 | Canola | cytosol | 40.48 | 43.98 |
| Bra025515.1-P | Field mustard | cytosol | 39.79 | 42.75 |
| Bra025463.1-P | Field mustard | cytosol | 41.18 | 42.5 |
| CDY48948 | Canola | cytosol | 39.79 | 42.44 |
| GSMUA_Achr4P17850_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 33.22 | 41.03 |
| Bra012652.1-P | Field mustard | cytosol | 45.33 | 40.18 |
Protein Annotations
| Gene3D:1.10.1820.10 | EntrezGene:100274243 | MapMan:18.4.3.9.2 | Gene3D:2.20.25.20 | UniProt:B4FZQ7 | EMBL:BT042595 |
| InterPro:Casein_kin_II_reg-sub_N | InterPro:Casein_kinase_II_beta_like | InterPro:Casein_kinase_II_reg-sub | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005956 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019887 | GO:GO:0030234 | GO:GO:0045859 | InterPro:IPR016149 | PFAM:PF01214 |
| PRINTS:PR00472 | ScanProsite:PS01101 | PANTHER:PTHR11740 | PANTHER:PTHR11740:SF5 | SMART:SM01085 | SUPFAM:SSF57798 |
| UniParc:UPI00017B820D | EnsemblPlantsGene:Zm00001d000052 | EnsemblPlants:Zm00001d000052_P004 | EnsemblPlants:Zm00001d000052_T004 | SEG:seg | : |
Description
Casein kinase II subunit beta-1
Coordinates
chrB73V4_ctg182:+:1208564..1214385
Molecular Weight (calculated)
32434.0 Da
IEP (calculated)
4.409
GRAVY (calculated)
-0.373
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRGRETGGN LRESGLFSGC DGDGGAGMDR KRIKDVLEKH LERSSPSTSR GVVSKERERL AAGKLPASLG KAEKVSDGEE FETDSEDEDS DISGSESEGT
101: SWISWFCTLR GNEFFCEIDD DYIQDDFNLC GLSMQVPYYD YALDLILDIE SSDDTYTEER KEFIELSAEI LYGLIHARYI LTSKGLAAML EKFKNRDFGG
201: CPRVYCCGQP CLPAGQSDVP RSSTVKIYCP KCEELNYPIS MYQGSILLIC SFNCFVQYDI SILPFASTGH FMLFFSSDLY FDHHSKLLK
101: SWISWFCTLR GNEFFCEIDD DYIQDDFNLC GLSMQVPYYD YALDLILDIE SSDDTYTEER KEFIELSAEI LYGLIHARYI LTSKGLAAML EKFKNRDFGG
201: CPRVYCCGQP CLPAGQSDVP RSSTVKIYCP KCEELNYPIS MYQGSILLIC SFNCFVQYDI SILPFASTGH FMLFFSSDLY FDHHSKLLK
001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
Arabidopsis Description
CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.