Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024547_P001 | Maize | peroxisome | 7.36 | 88.33 |
| EES13385 | Sorghum | nucleus | 90.83 | 87.55 |
| Zm00001d024546_P001 | Maize | nucleus | 79.17 | 85.97 |
| PGSC0003DMT400029394 | Potato | nucleus | 7.5 | 79.41 |
| HORVU7Hr1G070870.2 | Barley | nucleus | 69.31 | 69.6 |
| TraesCS7A01G299400.3 | Wheat | nucleus | 68.61 | 66.22 |
| TraesCS7D01G295400.1 | Wheat | nucleus | 68.47 | 66.0 |
| TraesCS7B01G188000.1 | Wheat | nucleus | 67.64 | 65.81 |
| CDX80750 | Canola | nucleus | 32.92 | 41.8 |
| CDY61862 | Canola | nucleus | 33.75 | 41.47 |
| Bra030496.1-P | Field mustard | nucleus | 33.61 | 41.3 |
| GSMUA_Achr1P06360_001 | Banana | nucleus | 40.56 | 40.22 |
| CDX90004 | Canola | nucleus | 33.61 | 39.8 |
| Zm00001d015487_P001 | Maize | nucleus | 4.31 | 39.74 |
| Bra033291.1-P | Field mustard | nucleus | 33.47 | 39.7 |
| CDY15205 | Canola | nucleus | 34.03 | 39.26 |
| AT1G01060.7 | Thale cress | nucleus | 34.58 | 38.6 |
| CDX80051 | Canola | nucleus | 29.44 | 38.41 |
| KRH06339 | Soybean | nucleus | 39.86 | 38.27 |
| KRH47757 | Soybean | nucleus | 39.72 | 38.13 |
| AT2G46830.1 | Thale cress | nucleus | 32.08 | 37.99 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 8.19 | 37.58 |
| KRH68974 | Soybean | nucleus | 39.03 | 37.57 |
| VIT_15s0048g02410.t01 | Wine grape | nucleus | 39.72 | 37.09 |
| Solyc10g005080.2.1 | Tomato | nucleus | 37.5 | 35.43 |
| GSMUA_Achr10P... | Banana | nucleus | 29.72 | 35.43 |
| KRG97259 | Soybean | nucleus, plastid | 38.33 | 33.7 |
| Zm00001d023295_P001 | Maize | nucleus | 4.31 | 32.63 |
| Zm00001d017609_P011 | Maize | nucleus | 11.81 | 31.14 |
| Zm00001d034947_P001 | Maize | mitochondrion | 7.08 | 30.36 |
| Zm00001d034946_P001 | Maize | mitochondrion | 7.08 | 30.36 |
| Zm00001d051480_P001 | Maize | nucleus | 16.39 | 29.87 |
| Zm00001d034945_P001 | Maize | mitochondrion, nucleus | 6.94 | 29.24 |
| CDY41563 | Canola | nucleus | 29.44 | 28.19 |
| Zm00001d002545_P002 | Maize | nucleus | 16.94 | 27.73 |
| Zm00001d026017_P001 | Maize | nucleus | 16.94 | 26.93 |
| Zm00001d014863_P002 | Maize | nucleus | 15.69 | 26.16 |
| Zm00001d017642_P001 | Maize | nucleus | 16.67 | 25.7 |
| Zm00001d045581_P002 | Maize | nucleus | 10.14 | 23.1 |
| Zm00001d046974_P002 | Maize | nucleus | 10.56 | 22.55 |
| Zm00001d039785_P001 | Maize | nucleus | 8.75 | 22.42 |
| Zm00001d036632_P002 | Maize | nucleus | 10.69 | 21.45 |
| Zm00001d044969_P001 | Maize | cytosol | 1.25 | 9.57 |
| Zm00001d012051_P001 | Maize | plastid | 1.67 | 8.82 |
| Zm00001d032105_P001 | Maize | plastid | 1.39 | 7.87 |
| Zm00001d011020_P001 | Maize | extracellular | 2.08 | 7.39 |
| CDX80052 | Canola | cytosol | 0.42 | 1.39 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100281091 | MapMan:15.5.2.2 | MapMan:27.1.1 | ProteinID:AQK50726.1 | ProteinID:AQK50727.1 |
| ProteinID:AQK50728.1 | ProteinID:AQK50730.1 | ProteinID:AQK50731.1 | ProteinID:AQK50734.1 | ProteinID:AQK50736.1 | ProteinID:AQK50737.1 |
| ProteinID:AQK50738.1 | ProteinID:AQK50740.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | UniProt:K7U156 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF43 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI000220829E | EnsemblPlantsGene:Zm00001d049543 | EnsemblPlants:Zm00001d049543_P003 | EnsemblPlants:Zm00001d049543_T003 | SEG:seg | : |
Description
circadian clock associated1 circadian clock associated1
Coordinates
chr4:+:34070590..34104400
Molecular Weight (calculated)
78789.2 Da
IEP (calculated)
6.380
GRAVY (calculated)
-0.797
Length
720 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVNSSGEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ IRSHAQKFFT KLEKEAMNNG TSPGQAHDID IPPPRPKRKP
101: NSPYPRKSCL SSETQTKELP NDKSTKPNMP LSNGHVKMVG DASLQNFQRK ELSEKGSRSE VLNLFRDAPS ASFSSVNKSS SNHGAPRRTE ASKTESRDMS
201: IMENNSFNPN TQEDVKVISD QEMERLNGIQ IRSKCEHSHE GYLDISTQQM KLMPKSVETT YVDEQTARAS HTLAESDGTA SIPVTVPEGT HPDQTSDQVG
301: INGSMNPCIH PMVSADPKFG SSATPQTFPH NYAAFAPMMQ CNCNQDTYRS FTNMSSTFSS MLVSTLLSNP AIHAAARLAA SYWPAAEGNT PIDPNQENPA
401: DGVQGRNIGS PPSMVSIVAA TVAAASAWWA TQGLLPFFAP PVAFPFVPAP SAAFPTVDVP RPSEKDRDCP AENAQIECQE ARKQVQFEGL RIAASSESDG
501: SGKGEVSLHT ELKLSPAQNA DATPTTGAGT NDAFRNKKKQ DRSSCGSNTP SSSDVDAGNV PEEDNANEKA KQASCSNSSA GDTNHRRFRS NGSTSDSWKE
601: VSEEGRLAFD ALFSREKLPQ SFSPPQAVDS KEVAKEEEDE VTTVAVDLNK NATSIDHDDL DTMDEPRASF PNELSHLKLK SRRTGFKPYK RCSVEAKENR
701: VPASDMVGTK RIRLDSEAST
101: NSPYPRKSCL SSETQTKELP NDKSTKPNMP LSNGHVKMVG DASLQNFQRK ELSEKGSRSE VLNLFRDAPS ASFSSVNKSS SNHGAPRRTE ASKTESRDMS
201: IMENNSFNPN TQEDVKVISD QEMERLNGIQ IRSKCEHSHE GYLDISTQQM KLMPKSVETT YVDEQTARAS HTLAESDGTA SIPVTVPEGT HPDQTSDQVG
301: INGSMNPCIH PMVSADPKFG SSATPQTFPH NYAAFAPMMQ CNCNQDTYRS FTNMSSTFSS MLVSTLLSNP AIHAAARLAA SYWPAAEGNT PIDPNQENPA
401: DGVQGRNIGS PPSMVSIVAA TVAAASAWWA TQGLLPFFAP PVAFPFVPAP SAAFPTVDVP RPSEKDRDCP AENAQIECQE ARKQVQFEGL RIAASSESDG
501: SGKGEVSLHT ELKLSPAQNA DATPTTGAGT NDAFRNKKKQ DRSSCGSNTP SSSDVDAGNV PEEDNANEKA KQASCSNSSA GDTNHRRFRS NGSTSDSWKE
601: VSEEGRLAFD ALFSREKLPQ SFSPPQAVDS KEVAKEEEDE VTTVAVDLNK NATSIDHDDL DTMDEPRASF PNELSHLKLK SRRTGFKPYK RCSVEAKENR
701: VPASDMVGTK RIRLDSEAST
001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
Arabidopsis Description
LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.