Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80051 | Canola | nucleus | 72.86 | 80.25 |
| PGSC0003DMT400029394 | Potato | nucleus | 8.72 | 77.94 |
| CDY41563 | Canola | nucleus | 68.91 | 55.72 |
| VIT_15s0048g02410.t01 | Wine grape | nucleus | 48.85 | 38.52 |
| AT1G01060.7 | Thale cress | nucleus | 40.62 | 38.29 |
| KRH06339 | Soybean | nucleus | 46.55 | 37.73 |
| KRH47757 | Soybean | nucleus | 46.22 | 37.47 |
| KRH68974 | Soybean | nucleus | 45.89 | 37.3 |
| KRG97259 | Soybean | nucleus, plastid | 46.38 | 34.43 |
| Solyc10g005080.2.1 | Tomato | nucleus | 43.09 | 34.38 |
| AT5G37260.1 | Thale cress | nucleus | 15.95 | 33.8 |
| Os08t0157600-01 | Rice | nucleus | 38.65 | 32.68 |
| HORVU7Hr1G070870.2 | Barley | nucleus | 38.49 | 32.64 |
| Zm00001d049543_P003 | Maize | nucleus | 37.99 | 32.08 |
| EES13385 | Sorghum | nucleus | 39.14 | 31.86 |
| GSMUA_Achr1P06360_001 | Banana | nucleus | 37.83 | 31.68 |
| TraesCS7B01G188000.1 | Wheat | nucleus | 38.32 | 31.49 |
| TraesCS7A01G299400.3 | Wheat | nucleus | 38.32 | 31.23 |
| TraesCS7D01G295400.1 | Wheat | nucleus | 38.16 | 31.06 |
| AT3G10113.1 | Thale cress | nucleus | 15.79 | 28.57 |
| GSMUA_Achr10P... | Banana | nucleus | 27.3 | 27.48 |
| AT5G17300.1 | Thale cress | nucleus | 17.27 | 27.13 |
| Zm00001d024546_P001 | Maize | nucleus | 29.28 | 26.85 |
| AT1G18330.2 | Thale cress | nucleus | 16.12 | 26.34 |
| AT3G09600.7 | Thale cress | nucleus | 12.66 | 25.84 |
| AT4G01280.2 | Thale cress | nucleus | 12.34 | 24.75 |
| AT1G01520.3 | Thale cress | plastid | 11.51 | 24.39 |
| AT5G52660.2 | Thale cress | nucleus | 13.16 | 24.17 |
| AT5G02840.1 | Thale cress | nucleus | 11.02 | 22.87 |
| CDX80052 | Canola | cytosol | 0.33 | 0.93 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.1 | EntrezGene:819296 | UniProt:A0A178VLU6 | ProteinID:AAC33507.1 |
| ProteinID:AAC98813.1 | ProteinID:AAM15022.1 | ProteinID:AEC10760.1 | ProteinID:AEC10761.1 | ProteinID:ANM61754.1 | ArrayExpress:AT2G46830 |
| EnsemblPlantsGene:AT2G46830 | RefSeq:AT2G46830 | TAIR:AT2G46830 | RefSeq:AT2G46830-TAIR-G | EnsemblPlants:AT2G46830.1 | TAIR:AT2G46830.1 |
| EMBL:AY519511 | EMBL:BT001096 | EMBL:BT001105 | Symbol:CCA1 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009733 |
| GO:GO:0009737 | GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010243 | GO:GO:0010468 | GO:GO:0042754 | GO:GO:0043496 | GO:GO:0043565 | GO:GO:0045892 |
| GO:GO:0045893 | GO:GO:0046686 | GO:GO:0048511 | GO:GO:0048574 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_001318437.1 | RefSeq:NP_850460.1 | RefSeq:NP_850461.1 | ProteinID:OAP07469.1 |
| ProteinID:OAP07470.1 | UniProt:P92973 | PFAM:PF00249 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000014 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS51294 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF43 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | EMBL:U28422 | UniParc:UPI00000A6F42 | SEG:seg | : |
Description
CCA1Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973]
Coordinates
chr2:+:19245591..19248915
Molecular Weight (calculated)
66979.1 Da
IEP (calculated)
5.892
GRAVY (calculated)
-0.933
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: METNSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFIEALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VAMGQALDIA IPPPRPKRKP
101: NNPYPRKTGS GTILMSKTGV NDGKESLGSE KVSHPEMANE DRQQSKPEEK TLQEDNCSDC FTHQYLSAAS SMNKSCIETS NASTFREFLP SREEGSQNNR
201: VRKESNSDLN AKSLENGNEQ GPQTYPMHIP VLVPLGSSIT SSLSHPPSEP DSHPHTVAGD YQSFPNHIMS TLLQTPALYT AATFASSFWP PDSSGGSPVP
301: GNSPPNLAAM AAATVAAASA WWAANGLLPL CAPLSSGGFT SHPPSTFGPS CDVEYTKAST LQHGSVQSRE QEHSEASKAR SSLDSEDVEN KSKPVCHEQP
401: SATPESDAKG SDGAGDRKQV DRSSCGSNTP SSSDDVEADA SERQEDGTNG EVKETNEDTN KPQTSESNAR RSRISSNITD PWKSVSDEGR IAFQALFSRE
501: VLPQSFTYRE EHREEEQQQQ EQRYPMALDL NFTAQLTPVD DQEEKRNTGF LGIGLDASKL MSRGRTGFKP YKRCSMEAKE SRILNNNPII HVEQKDPKRM
601: RLETQAST
101: NNPYPRKTGS GTILMSKTGV NDGKESLGSE KVSHPEMANE DRQQSKPEEK TLQEDNCSDC FTHQYLSAAS SMNKSCIETS NASTFREFLP SREEGSQNNR
201: VRKESNSDLN AKSLENGNEQ GPQTYPMHIP VLVPLGSSIT SSLSHPPSEP DSHPHTVAGD YQSFPNHIMS TLLQTPALYT AATFASSFWP PDSSGGSPVP
301: GNSPPNLAAM AAATVAAASA WWAANGLLPL CAPLSSGGFT SHPPSTFGPS CDVEYTKAST LQHGSVQSRE QEHSEASKAR SSLDSEDVEN KSKPVCHEQP
401: SATPESDAKG SDGAGDRKQV DRSSCGSNTP SSSDDVEADA SERQEDGTNG EVKETNEDTN KPQTSESNAR RSRISSNITD PWKSVSDEGR IAFQALFSRE
501: VLPQSFTYRE EHREEEQQQQ EQRYPMALDL NFTAQLTPVD DQEEKRNTGF LGIGLDASKL MSRGRTGFKP YKRCSMEAKE SRILNNNPII HVEQKDPKRM
601: RLETQAST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.