CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97259	nucleus
KRH04471
KRH06339	nucleus
KRH28388
KRH47757	nucleus
KRH58068
KRH68974	nucleus
KRH77093

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	KRG97259	AT2G46830.1	14978263
AT2G46830.1	KRH06339	AT2G46830.1	14978263
AT2G46830.1	KRH47757	AT2G46830.1	14978263
AT2G46830.1	KRH68974	AT2G46830.1	14978263
AT2G46830.1	KRG97259	AT2G46830.1	22715042
AT2G46830.1	KRH06339	AT2G46830.1	22715042
AT2G46830.1	KRH47757	AT2G46830.1	22715042
AT2G46830.1	KRH68974	AT2G46830.1	22715042
AT2G46830.1	KRG97259	AT2G46830.1	22715042
AT2G46830.1	KRH06339	AT2G46830.1	22715042
AT2G46830.1	KRH47757	AT2G46830.1	22715042
AT2G46830.1	KRH68974	AT2G46830.1	22715042
AT2G46830.1	KRH04471	AT5G67380.1	14978263
AT2G46830.1	KRH28388	AT5G67380.1	14978263
AT2G46830.1	KRH58068	AT5G67380.1	14978263
AT2G46830.1	KRH77093	AT5G67380.1	14978263
AT2G46830.1	KRH04471	AT5G67380.1	9724822
AT2G46830.1	KRH28388	AT5G67380.1	9724822
AT2G46830.1	KRH58068	AT5G67380.1	9724822
AT2G46830.1	KRH77093	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06339	Soybean	nucleus	94.67	94.67
PGSC0003DMT400029394	Potato	nucleus	7.6	83.82
KRH68974	Soybean	nucleus	72.93	73.13
KRG97259	Soybean	nucleus, plastid	72.93	66.79
VIT_15s0048g02410.t01	Wine grape	nucleus	62.67	60.96
AT1G01060.7	Thale cress	nucleus	45.2	52.56
Bra033291.1-P	Field mustard	nucleus	41.87	51.73
Solyc10g005080.2.1	Tomato	nucleus	52.53	51.71
CDX90004	Canola	nucleus	41.87	51.64
CDY61862	Canola	nucleus	40.0	51.19
CDY15205	Canola	nucleus	42.53	51.12
Bra030496.1-P	Field mustard	nucleus	39.73	50.85
CDX80750	Canola	nucleus	38.4	50.79
CDX80051	Canola	nucleus	34.8	47.28
CDY64825	Canola	cytosol, nucleus, plastid	9.87	47.13
AT2G46830.1	Thale cress	nucleus	37.47	46.22
Os08t0157600-01	Rice	nucleus	39.33	41.03
GSMUA_Achr1P06360_001	Banana	nucleus	39.47	40.77
Zm00001d049543_P003	Maize	nucleus	38.13	39.72
EES13385	Sorghum	nucleus	38.93	39.09
HORVU7Hr1G070870.2	Barley	nucleus	37.2	38.91
TraesCS7B01G188000.1	Wheat	nucleus	36.93	37.43
TraesCS7A01G299400.3	Wheat	nucleus	37.07	37.27
TraesCS7D01G295400.1	Wheat	nucleus	36.8	36.95
GSMUA_Achr10P...	Banana	nucleus	28.8	35.76
Zm00001d024546_P001	Maize	nucleus	31.2	35.29
CDY41563	Canola	nucleus	34.13	34.04
KRH20042	Soybean	nucleus	11.6	30.31
KRH17280	Soybean	nucleus	17.33	29.82
KRG98008	Soybean	nucleus	14.0	29.09
KRH72927	Soybean	nucleus	16.13	27.75
KRH67632	Soybean	nucleus	10.13	25.42
KRG95914	Soybean	nucleus	9.73	25.26
KRH40382	Soybean	nucleus	9.6	25.09
KRH35235	Soybean	nucleus	10.4	25.0
KRH08856	Soybean	nucleus	10.0	24.92
KRH32383	Soybean	plastid	9.73	24.83
KRH38938	Soybean	nucleus	15.2	24.46
KRH09476	Soybean	nucleus	15.47	24.32
KRH00849	Soybean	nucleus	9.87	24.03
KRH06589	Soybean	nucleus	10.4	23.49
KRG91589	Soybean	nucleus	10.27	23.4
KRH48063	Soybean	nucleus	10.27	23.26
KRH19794	Soybean	nucleus	9.33	23.26
KRH38371	Soybean	nucleus	10.13	21.53
CDX80052	Canola	cytosol	0.53	1.85

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100101859	MapMan:15.5.2.2	MapMan:27.1.1	EMBL:ACUP02004162	ncoils:Coil
EnsemblPlantsGene:GLYMA_07G048500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K7KZP5	EnsemblPlants:KRH47757	ProteinID:KRH47757	ProteinID:KRH47757.1	ProteinID:KRH47758.1	ProteinID:KRH47759.1
ProteinID:KRH47760.1	ProteinID:KRH47761.1	ProteinID:KRH47762.1	ProteinID:KRH47763.1	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002337C00	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:4102968..4114174

Molecular Weight (calculated)

82320.7 Da

IEP (calculated)

6.554

GRAVY (calculated)

-0.789

Length

750 amino acids

Sequence
(BLAST)

001: MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEALVKG VPIGKALDID IPPPRPKRKP
101: NNPYPRKTRI GSASLHSGAK DGKLNLVESS HVNQALNLEK EPLPEKHDLD EGITTVKENK DENRGAVFTL LQEVPCSSVS SANKSSITMS VPLGNPCAFK
201: EITPSVKEVI PRDEKTESFV TIELENGTLE INDRKQTNGT SKDSTLENSD ALHMKLVQNE KTDGLDCALT IDGMQGNQNY PRHVTVHVVD GNLGTNTQNP
301: SQDMLFRDSM FQPIGGVNGQ QNVFTNSAPS NTSESQNNTV RSSVHQSFLP YPPFTQHNQD DCQSFFHMSS TFSNLIISTL MQNPAAHAAA SFAATFWPYA
401: NPETSANSPR CSQGGFTNRQ IGSPPSVAAI AAATVAAATA WWAAHGLLPL CAPLHTSFAC SPASVTAVPS MNTGEAPALK AEQEKTTLQN PPLQDQMLDP
501: EYSEAQQAQH SASKSPAAIL SDSESGDAKL NTSSKATDHE TNKTIPEHLD SNKTKGRKPV DRSSCGSHTA SSSDVETDAL EKGEKGKEEP ETPDANQLAI
601: DFSNRRRSVS NLTDSWKEVS EEGRLAFQAL FSREVLPQSF SPPHALKNKN QQMDNANNNK QNIDDKDEDP DSKKCSSNYE AMQKNLPFVE NNEGLLTIGL
701: GQGKLKTRRT GFKPYKRCSM EAKENRVGAS NNQGEEQGCK RIRLEGETST

Best Arabidopsis Sequence Match ( AT1G01060.1 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK
201: NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
301: IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF
401: EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN
501: QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
601: KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.