CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06589	Soybean	nucleus	90.94	90.66
KRH00849	Soybean	nucleus	64.35	69.16
KRH40382	Soybean	nucleus	59.21	68.29
VIT_15s0046g02260.t01	Wine grape	nucleus	65.86	66.46
KRH08856	Soybean	nucleus	55.89	61.46
GSMUA_Achr7P04620_001	Banana	nucleus	49.24	61.05
KRH35235	Soybean	nucleus	56.19	59.62
KRG91589	Soybean	nucleus	56.19	56.53
Solyc01g095030.2.1	Tomato	nucleus	54.08	54.08
PGSC0003DMT400000546	Potato	nucleus	51.36	53.46
KRH38371	Soybean	nucleus	55.59	52.12
KRH32383	Soybean	plastid	44.41	50.0
KRG95914	Soybean	nucleus	42.3	48.44
KRH19794	Soybean	nucleus	42.6	46.84
KRH67632	Soybean	nucleus	41.99	46.49
KRH20042	Soybean	nucleus	22.36	25.78
KRG98008	Soybean	nucleus	23.26	21.33
KRH17280	Soybean	nucleus	24.17	18.35
KRH09476	Soybean	nucleus	25.98	18.03
KRH72927	Soybean	nucleus	22.96	17.43
KRH38938	Soybean	nucleus	24.47	17.38
KRH68974	Soybean	nucleus	25.98	11.5
KRH06339	Soybean	nucleus	23.87	10.53
KRG97259	Soybean	nucleus, plastid	25.98	10.5
KRH47757	Soybean	nucleus	23.26	10.27

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	EMBL:ACUP02004199	EnsemblPlantsGene:GLYMA_07G066100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1KI50	InterPro:IPR017930	EnsemblPlants:KRH48063
ProteinID:KRH48063	ProteinID:KRH48063.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI00023C7B99	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:5960745..5967003

Molecular Weight (calculated)

36839.7 Da

IEP (calculated)

9.254

GRAVY (calculated)

-0.587

Length

331 amino acids

Sequence
(BLAST)

001: MVSVNPSPAQ GFYFFDPSNM ALPGVNNLPP PPLPAPPSHA AVEDPSKKIR KPYTITKSRE SWTEQEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA
101: QKYFLKVQKK GTSEHVPPPR PKRKAARPYP QKAPKTPTVS QVMGPLQSSS SFIEPAYIYI PDSSSALGTP VTNMPSSSWN YNNTPQPVNV PQVTRDDMGF
201: TVAGQTAPLN CCCSSSNESN PPTWPSSKRI NQGDQEPIKV MPDFAQVYSF IGSVFDPNST NHLQKLRQMD PLNVETILLL MRNLSINLMS PEFEDHKRML
301: SSYDTDSDKS KLVNICSKSL TNKSESAVLS A

Best Arabidopsis Sequence Match ( AT4G01280.1 )
(BLAST)

001: MVSVNPRPKG FPVFDSSNMS LPSSDGFGSI PATGRTSTVS FSEDPTTKIR KPYTIKKSRE NWTDQEHDKF LEALHLFDRD WKKIEAFVGS KTVVQIRSHA
101: QKYFLKVQKS GANEHLPPPR PKRKASHPYP IKAPKNVAYT SLPSSSTLPL LEPGYLYSSD SKSLMGNQAV CASTSSSWNH ESTNLPKPVI EEEPGVSATA
201: PLPNNRCRQE DTERVRAVTK PNNEESCEKP HRVMPNFAEV YSFIGSVFDP NTSGHLQRLK QMDPINMETV LLLMQNLSVN LTSPEFAEQR RLISSYSAKA
301: LK

Arabidopsis Description

RVE5Protein REVEILLE 5 [Source:UniProtKB/Swiss-Prot;Acc:C0SVG5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.