CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97259	nucleus
KRH04471
KRH06339	nucleus
KRH28388
KRH47757	nucleus
KRH58068
KRH68974	nucleus
KRH77093

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	KRG97259	AT2G46830.1	14978263
AT2G46830.1	KRH06339	AT2G46830.1	14978263
AT2G46830.1	KRH47757	AT2G46830.1	14978263
AT2G46830.1	KRH68974	AT2G46830.1	14978263
AT2G46830.1	KRG97259	AT2G46830.1	22715042
AT2G46830.1	KRH06339	AT2G46830.1	22715042
AT2G46830.1	KRH47757	AT2G46830.1	22715042
AT2G46830.1	KRH68974	AT2G46830.1	22715042
AT2G46830.1	KRG97259	AT2G46830.1	22715042
AT2G46830.1	KRH06339	AT2G46830.1	22715042
AT2G46830.1	KRH47757	AT2G46830.1	22715042
AT2G46830.1	KRH68974	AT2G46830.1	22715042
AT2G46830.1	KRH04471	AT5G67380.1	14978263
AT2G46830.1	KRH28388	AT5G67380.1	14978263
AT2G46830.1	KRH58068	AT5G67380.1	14978263
AT2G46830.1	KRH77093	AT5G67380.1	14978263
AT2G46830.1	KRH04471	AT5G67380.1	9724822
AT2G46830.1	KRH28388	AT5G67380.1	9724822
AT2G46830.1	KRH58068	AT5G67380.1	9724822
AT2G46830.1	KRH77093	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68974	Soybean	nucleus	83.27	91.18
PGSC0003DMT400029394	Potato	nucleus	7.08	85.29
KRH06339	Soybean	nucleus	67.28	73.47
KRH47757	Soybean	nucleus	66.79	72.93
VIT_15s0048g02410.t01	Wine grape	nucleus	57.63	61.22
AT1G01060.7	Thale cress	nucleus	41.27	52.4
CDX90004	Canola	nucleus	38.83	52.3
Bra033291.1-P	Field mustard	nucleus	38.58	52.06
CDY15205	Canola	nucleus	39.44	51.76
Solyc10g005080.2.1	Tomato	nucleus	46.76	50.26
CDY61862	Canola	nucleus	35.41	49.49
CDX80750	Canola	nucleus	34.19	49.38
Bra030496.1-P	Field mustard	nucleus	35.16	49.15
CDY64825	Canola	cytosol, nucleus, plastid	9.16	47.77
CDX80051	Canola	nucleus	31.87	47.28
AT2G46830.1	Thale cress	nucleus	34.43	46.38
GSMUA_Achr1P06360_001	Banana	nucleus	35.53	40.08
Os08t0157600-01	Rice	nucleus	34.07	38.8
EES13385	Sorghum	nucleus	35.04	38.42
Zm00001d049543_P003	Maize	nucleus	33.7	38.33
HORVU7Hr1G070870.2	Barley	nucleus	33.09	37.8
GSMUA_Achr10P...	Banana	nucleus	27.84	37.75
TraesCS7B01G188000.1	Wheat	nucleus	32.23	35.68
TraesCS7A01G299400.3	Wheat	nucleus	32.48	35.66
TraesCS7D01G295400.1	Wheat	nucleus	32.11	35.21
CDY41563	Canola	nucleus	31.38	34.18
Zm00001d024546_P001	Maize	nucleus	26.86	33.18
KRH20042	Soybean	nucleus	11.23	32.06
KRH17280	Soybean	nucleus	16.36	30.73
KRG98008	Soybean	nucleus	13.31	30.19
KRH72927	Soybean	nucleus	15.38	28.9
KRH67632	Soybean	nucleus	10.13	27.76
KRG95914	Soybean	nucleus	9.52	26.99
KRH32383	Soybean	plastid	9.65	26.87
KRH40382	Soybean	nucleus	9.4	26.83
KRH08856	Soybean	nucleus	9.77	26.58
KRH48063	Soybean	nucleus	10.5	25.98
KRH00849	Soybean	nucleus	9.77	25.97
KRH35235	Soybean	nucleus	9.89	25.96
KRH06589	Soybean	nucleus	10.5	25.9
KRH38938	Soybean	nucleus	14.65	25.75
KRH09476	Soybean	nucleus	14.65	25.16
KRG91589	Soybean	nucleus	10.01	24.92
KRH19794	Soybean	nucleus	8.67	23.59
KRH38371	Soybean	nucleus	10.01	23.23
CDX80052	Canola	cytosol	0.37	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	EntrezGene:780540	UniProt:A0A0R0ETE0	EMBL:ACUP02012181
EnsemblPlantsGene:GLYMA_19G260900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
EnsemblPlants:KRG97259	ProteinID:KRG97259	ProteinID:KRG97259.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51257	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF82	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0003DE8CF5	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:50395968..50409535

Molecular Weight (calculated)

89795.8 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.674

Length

819 amino acids

Sequence
(BLAST)

001: MHDRTFNSLL LHHGFTSSSI TLSSASACFH HNGLTIWCVP CHKKRKEIFL LPTPRQGRSE AALASSTRPL MDADSSGEEV LIKTRKPYTI TKQRERWTEE
101: EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAFVKG VPIGQALDID IPPPRPKRKP NNPYPRKTNV GGAPTLHSGA RHGKPLISIV
201: SSLGKQALGL EKEPLPEKHD VDLRPSTVKE NKDQSCSKVF TILQEAPCSS VSSANKNSTS ILVPLRNSCA LRKFIPSVKD VITQDETNDS FVTDDLENQK
301: LEIDDGKHTQ KSNGTCKVSK SENSGASELV QTEKTDGLNC ALTIEGVQGN QNYPRHVPVH VVDGNLGTST QNPSPDMVFQ DSIFQPKGGV NGQPNLVTIS
401: ATSNISESQN NTARSSIHQS FPPCPTFTQD DYHSFLQVSS TFSSLIVSTL LQNPAAHAAA SFAATFWPYA NAETSADSPM CTPDFPSRQI GSPPSVTAIA
501: AATVAAATAW WAAHGLLPLC APLHTAFACP PASAIAVPLM NIDESPQKTE QEEIKPQNSS LQDQILDPEH SEAQHSAPKS PAVFSSKSEE RGDANLNTSP
601: KATNHETNQV ISENPDSNKM KGRKPVDRSS CGSNTTSSSE ETELLLKDEK EKEEPKTPDA NILDTELSNR RSRSINNLTD SWKEVSEEGR LAFQALFSRE
701: VLPQSFSPTH DLINEDNQID SIKDNDQNTD YKDEDLESKK CSSNCDGVQK NLLFVKDNNE EEGLLIIGLG PGKLKTRPTG FKPYKRCSVE ANENRIGTAC
801: NQGEEKGPKR IRLNGEAST

Best Arabidopsis Sequence Match ( AT1G01060.1 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK
201: NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
301: IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF
401: EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN
501: QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
601: KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.