CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90004	Canola	nucleus	94.23	96.71
Bra033291.1-P	Field mustard	nucleus	94.07	96.71
PGSC0003DMT400029394	Potato	nucleus	8.65	79.41
CDX80750	Canola	nucleus	63.14	69.49
CDY64825	Canola	cytosol, nucleus, plastid	17.47	69.43
AT1G01060.7	Thale cress	nucleus	71.31	68.99
CDY61862	Canola	nucleus	64.26	68.43
KRH47757	Soybean	nucleus	51.12	42.53
KRH06339	Soybean	nucleus	51.12	42.53
KRH68974	Soybean	nucleus	50.16	41.84
CDX80051	Canola	nucleus	36.7	41.49
VIT_15s0048g02410.t01	Wine grape	nucleus	50.8	41.12
KRG97259	Soybean	nucleus, plastid	51.76	39.44
Solyc10g005080.2.1	Tomato	nucleus	47.44	38.85
Os08t0157600-01	Rice	nucleus	40.71	35.33
GSMUA_Achr1P06360_001	Banana	nucleus	40.38	34.71
Zm00001d049543_P003	Maize	nucleus	39.26	34.03
HORVU7Hr1G070870.2	Barley	nucleus	38.94	33.89
CDY16939	Canola	nucleus	16.03	33.33
EES13385	Sorghum	nucleus	39.74	33.2
CDY38566	Canola	nucleus	16.51	32.09
TraesCS7B01G188000.1	Wheat	nucleus	37.82	31.89
TraesCS7A01G299400.3	Wheat	nucleus	37.98	31.77
TraesCS7D01G295400.1	Wheat	nucleus	37.82	31.59
CDY26169	Canola	nucleus	15.71	31.21
CDY26997	Canola	nucleus	16.03	31.15
Zm00001d024546_P001	Maize	nucleus	31.41	29.56
CDY41563	Canola	nucleus	35.42	29.39
CDX69388	Canola	nucleus	17.47	29.14
CDX85462	Canola	nucleus	17.31	28.95
CDY02714	Canola	nucleus	16.99	28.73
GSMUA_Achr10P...	Banana	nucleus	27.56	28.48
CDY19206	Canola	nucleus	16.35	28.18
CDX70747	Canola	nucleus	16.19	27.98
CDX78737	Canola	nucleus	16.03	27.4
CDX90039	Canola	plastid	11.54	26.67
CDY41299	Canola	nucleus	11.86	26.06
CDY07188	Canola	nucleus	12.34	25.84
CDY48515	Canola	nucleus	12.66	25.82
CDY15171	Canola	nucleus	11.06	25.56
CDX80840	Canola	nucleus	10.9	25.19
CDY52837	Canola	nucleus	12.34	25.16
CDY44719	Canola	nucleus	12.18	25.0
CDY41598	Canola	nucleus	12.02	24.92
CDY11228	Canola	nucleus	10.9	24.64
CDX70341	Canola	nucleus	11.22	24.56
CDY56155	Canola	nucleus	12.66	24.46
CDY51831	Canola	vacuole	12.66	22.7
CDY27841	Canola	nucleus	9.94	21.68
CDY10419	Canola	nucleus	11.7	13.67
CDX80052	Canola	cytosol	0.48	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	GO:A0A078FL85	UniProt:A0A078FL85	EnsemblPlants:CDY15205
ProteinID:CDY15205	ProteinID:CDY15205.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00085393001	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF82	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0004EE02CC	SEG:seg	:	:	:

Description

BnaC05g00840DBnaC05g00840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL85]

Coordinates

chrLK032052:+:428271..432040

Molecular Weight (calculated)

67151.8 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.747

Length

624 amino acids

Sequence
(BLAST)

001: MDTNTSGDEL LTKARKPYTI TKQRERWTED EHDRFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEAKG IPVCQALNIE IPPPRPKRKP
101: NTPYPRKPGN NGPSSSQVPS SAKHVSSASS SQCNQAFLDL EKVPISEETS NKKENQDDNC SGVSTVNKCP LPKKVTQPSL RKESADNGTS KKASNVESAK
201: CTQFQFHPPG MVSQDLMFCP MGDRVHGHVN LPATTTSSAT TTTTTSQQAF PACPSQDSFL HFSSTFPNLI ISSLLQNPAA HAAATFAASV WPYSNVGNSG
301: GDSSTQMSSS PPNVAAIAAA TVAAATAWWA SHGLIPVCAP PAPVTCLPLP TFAVPTQATD KIDTVENDQL PLEKQNTALQ DKKMASKSPA SSSDDSEETG
401: VTKLNAGSKT NGDKEEVVVD AAAAAAAALH DPNASPKKKL VDRSSCGSNT PSGSDAETDA LDKMEKDNED VKEADANQQP SVIELSNRRS KIRDNNNNQT
501: TDSWKEVSQG GRKAFQALFA RQRLPQSFSP PQVAAENVNG KQSDTSMPMA PDLNKVQDSC DADQESGVVM IGDGTGKSLK TRQSGFKPYK RCSMEAKESQ
601: DGNANNESDE KVCKRIRLEG EAST

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.