Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006394.1-P | Field mustard | nucleus | 94.52 | 94.78 |
| CDX70747 | Canola | nucleus | 84.93 | 85.87 |
| CDY02714 | Canola | nucleus | 76.99 | 76.15 |
| CDY16939 | Canola | nucleus | 62.47 | 76.0 |
| AT5G17300.1 | Thale cress | nucleus | 80.0 | 75.45 |
| CDX85462 | Canola | nucleus | 76.99 | 75.34 |
| CDX69388 | Canola | nucleus | 76.71 | 74.87 |
| CDY38566 | Canola | nucleus | 34.25 | 38.94 |
| CDY26997 | Canola | nucleus | 33.7 | 38.32 |
| CDY26169 | Canola | nucleus | 29.86 | 34.71 |
| PGSC0003DMT400055263 | Potato | nucleus | 43.29 | 33.19 |
| Solyc02g036370.2.1 | Tomato | nucleus | 41.92 | 32.97 |
| CDY19206 | Canola | nucleus | 30.96 | 31.22 |
| CDY07188 | Canola | nucleus | 20.0 | 24.5 |
| CDX90039 | Canola | plastid | 18.08 | 24.44 |
| CDX80840 | Canola | nucleus | 18.08 | 24.44 |
| CDY41299 | Canola | nucleus | 18.36 | 23.59 |
| CDY11228 | Canola | nucleus | 17.81 | 23.55 |
| CDY15171 | Canola | nucleus | 17.26 | 23.33 |
| CDY48515 | Canola | nucleus | 19.18 | 22.88 |
| CDX70341 | Canola | nucleus | 17.53 | 22.46 |
| CDY52837 | Canola | nucleus | 18.63 | 22.22 |
| CDY41598 | Canola | nucleus | 18.08 | 21.93 |
| CDY56155 | Canola | nucleus | 19.18 | 21.67 |
| CDY44719 | Canola | nucleus | 17.81 | 21.38 |
| CDY51831 | Canola | vacuole | 19.45 | 20.4 |
| CDY27841 | Canola | nucleus | 15.34 | 19.58 |
| CDX80750 | Canola | nucleus | 26.58 | 17.11 |
| CDX80051 | Canola | nucleus | 25.48 | 16.85 |
| CDX90004 | Canola | nucleus | 27.4 | 16.45 |
| CDY61862 | Canola | nucleus | 26.03 | 16.21 |
| CDY15205 | Canola | nucleus | 27.4 | 16.03 |
| CDY41563 | Canola | nucleus | 25.21 | 12.23 |
| CDY10419 | Canola | nucleus | 17.81 | 12.17 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 3.84 | 8.92 |
| CDX80052 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078CPS3 | EnsemblPlants:CDX78737 | ProteinID:CDX78737 | ProteinID:CDX78737.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00130168001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR12802 |
| PANTHER:PTHR12802:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EDC988 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g06490D
Coordinates
chrLK031815:-:2008620..2011311
Molecular Weight (calculated)
40700.8 Da
IEP (calculated)
8.467
GRAVY (calculated)
-0.778
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSPPLTANP QVAKASLRSR VEETSDTQIQ FNDYAPKVRK PYIITKERER WTDEEHYKFV EALKLHGRAW RRIQGHVGTK TAVQIRSHAQ KFFSKVAREA
101: TGGSNEGSVE AIVIPPPRPK RRPMHPYPRK LGNKGDHTER DNSSPTSVLS PVGSEALGSL DSHSPNRSLS PVSFASPQAA LATTSNAPEE LETLKLELFP
201: RERLVNRESS IKEPTKQSLK LFGKIVLVSD SDMSSSLTTY CKSPTQPLPW KLSMVIDPQE ESLSCLIQVP SKQEEVENRC LDSEKAFQNE GSSTGSNTGS
301: VDDTGHTDKS SEPEAMVSQW EFTPSERSAF SELTRGTSEP NSRGFCPYKK RKMITEAEQD IRLCL
101: TGGSNEGSVE AIVIPPPRPK RRPMHPYPRK LGNKGDHTER DNSSPTSVLS PVGSEALGSL DSHSPNRSLS PVSFASPQAA LATTSNAPEE LETLKLELFP
201: RERLVNRESS IKEPTKQSLK LFGKIVLVSD SDMSSSLTTY CKSPTQPLPW KLSMVIDPQE ESLSCLIQVP SKQEEVENRC LDSEKAFQNE GSSTGSNTGS
301: VDDTGHTDKS SEPEAMVSQW EFTPSERSAF SELTRGTSEP NSRGFCPYKK RKMITEAEQD IRLCL
001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL
Arabidopsis Description
RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.