Factsheet for PGSC0003DMT400055263

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036370.2.1	Tomato	nucleus	88.03	90.3
PGSC0003DMT400029394	Potato	nucleus	10.5	73.53
CDY16939	Canola	nucleus	32.14	51.0
KRH20042	Soybean	nucleus	28.78	47.74
Bra023610.1-P	Field mustard	nucleus	36.13	46.36
CDY02714	Canola	nucleus	35.29	45.53
VIT_04s0079g00410.t01	Wine grape	nucleus	45.8	45.51
CDX69388	Canola	nucleus	35.5	45.19
Bra008563.1-P	Field mustard	nucleus	33.61	45.07
CDX85462	Canola	nucleus	34.87	44.5
AT5G17300.1	Thale cress	nucleus	35.92	44.19
CDX70747	Canola	nucleus	33.4	44.04
KRG98008	Soybean	nucleus	33.4	44.04
KRH17280	Soybean	nucleus	39.92	43.58
CDX78737	Canola	nucleus	33.19	43.29
AT5G37260.1	Thale cress	nucleus	26.05	43.21
Bra006394.1-P	Field mustard	nucleus	32.98	43.13
KRH72927	Soybean	nucleus	38.45	41.97
CDY26997	Canola	nucleus	26.47	39.25
CDY38566	Canola	nucleus	26.26	38.94
Bra039503.1-P	Field mustard	nucleus	26.05	37.24
Bra024430.1-P	Field mustard	mitochondrion, nucleus	15.55	34.58
PGSC0003DMT400065850	Potato	nucleus	29.2	29.83
PGSC0003DMT400074344	Potato	plastid	16.18	26.64
PGSC0003DMT400028711	Potato	nucleus	15.97	26.57
PGSC0003DMT400000546	Potato	nucleus	15.97	23.9

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102602066	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1BXP3	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400021459	PGSC:PGSC0003DMG400021459	EnsemblPlants:PGSC0003DMT400055263	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF60
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294A609	RefSeq:XP_006350462.1
SEG:seg	:	:	:	:	:

Description

(Fragment) [Source:PGSC_GENE;Acc:PGSC0003DMG400021459]

Coordinates

chr2:-:17758722..17762087

Molecular Weight (calculated)

52577.2 Da

IEP (calculated)

6.428

GRAVY (calculated)

-0.778

Length

476 amino acids

Sequence
(BLAST)

001: MTIGDQSESD TILPSRNRMS VDVGAPSPRS IQMEEQVIPG EEYAPKIRKP YTISKQRERW SEEEHKKFLE ALKLHGRAWR RIEEHVGTKT AVQIRSHAQK
101: FFSKVVRESS NGDASSVKSI EIPPPRPKRK PMHPYPRKMV TPLKSGTLAS EKLNRSGSPD LYLSEPENQS PTSVLSAFGS DAFGTVDSTK PSEQSSPVSS
201: AVAENSGDLV LSEPSDFIVE ESRSSPARAY TSSNPANQTC VKLELFPEDN DFVKEGSDEA SSTQCLKLFG KTVLVTDTYM PSSTSGQISL TDENDEPASR
301: TLPRSTFPAK YLHWDSECPR STFSIVPPTP SYYFPTPNVS PGTNQSDSTP LLPWGSSAAV RCTQVHNPIP MKGRPLFNDR DLEGKETQKE GSSTGSNTES
401: VDAELSGDKN LEIEAQSSRN LVEESVRGGS LFERRANSTK RVKGFVPYKR CLAERGMSSS TLTGEEREEQ RTRLCL

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.