Factsheet for PGSC0003DMT400028711

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084370.1.1	Tomato	nucleus	96.85	93.58
VIT_08s0040g03220.t01	Wine grape	nucleus	70.63	71.38
KRH32383	Soybean	plastid	70.63	68.71
KRG95914	Soybean	nucleus	68.88	68.17
KRH67632	Soybean	nucleus	67.48	64.55
KRH19794	Soybean	nucleus	66.08	62.79
Bra034074.1-P	Field mustard	nucleus	57.69	62.74
AT3G09600.7	Thale cress	nucleus	63.99	61.41
CDY41299	Canola	nucleus	59.44	59.86
PGSC0003DMT400029394	Potato	nucleus	13.99	58.82
CDY11228	Canola	nucleus	56.64	58.7
CDY44719	Canola	nucleus	62.24	58.55
CDX70341	Canola	nucleus	58.04	58.25
Bra029778.1-P	Field mustard	nucleus	61.89	58.22
CDY41598	Canola	nucleus	61.19	58.14
CDX80840	Canola	nucleus	54.55	57.78
AT5G02840.1	Thale cress	nucleus	59.09	57.68
Bra005751.1-P	Field mustard	nucleus	55.24	55.83
Bra009562.1-P	Field mustard	nucleus	59.09	54.17
PGSC0003DMT400074344	Potato	plastid	45.45	44.98
PGSC0003DMT400000546	Potato	nucleus	49.3	44.34
CDY10419	Canola	nucleus	57.34	30.71
PGSC0003DMT400055263	Potato	nucleus	26.57	15.97
PGSC0003DMT400065850	Potato	nucleus	25.52	15.67

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1ARJ8	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400011048	PGSC:PGSC0003DMG400011048	EnsemblPlants:PGSC0003DMT400028711	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF81
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00029502F3	SEG:seg

Description

MYB transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400011048]

Coordinates

chr10:+:54739865..54744793

Molecular Weight (calculated)

31705.7 Da

IEP (calculated)

9.423

GRAVY (calculated)

-0.528

Length

286 amino acids

Sequence
(BLAST)

001: MANNSTPTDA SSKKIRKPYT ITKSRESWTE EEHDKFLEAL QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVQKNGSIA HVPPPRPKRK AAHPYPQKAP
101: KNVLVPLQAS MGYPSSMNSF PPGYPLWDDA SVLINSPSGG VMPSQDEYHL QRIQADIGSK GATLISNSSM SGIRSSNRTA LSSELPDQSK LGSVPHGIPD
201: FAEVYSFIGS VFDPDTRGHV QKLKEMDPIN FETVLMLMRN LTMNLSNPDF EPIKNVLSTY DLSSKVVGLP TGGAVNNRND LSCQTI

Best Arabidopsis Sequence Match ( AT3G09600.7 )
(BLAST)

001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA

Arabidopsis Description

RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.