CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11228	Canola	nucleus	92.22	90.22
CDX70341	Canola	nucleus	87.04	82.46
AT5G02840.1	Thale cress	nucleus	83.7	77.13
CDY41299	Canola	nucleus	62.59	59.51
CDY41598	Canola	nucleus	65.56	58.8
CDY44719	Canola	nucleus	65.93	58.55
VIT_08s0040g03220.t01	Wine grape	nucleus	60.0	57.24
KRH32383	Soybean	plastid	60.37	55.44
PGSC0003DMT400028711	Potato	nucleus	57.78	54.55
Solyc10g084370.1.1	Tomato	nucleus	59.26	54.05
KRH19794	Soybean	nucleus	60.0	53.82
KRH67632	Soybean	nucleus	58.52	52.84
KRG95914	Soybean	nucleus	56.3	52.6
CDX90039	Canola	plastid	47.04	47.04
CDY15171	Canola	nucleus	46.3	46.3
CDY52837	Canola	nucleus	50.37	44.44
CDY56155	Canola	nucleus	50.74	42.41
CDY27841	Canola	nucleus	43.33	40.91
CDY07188	Canola	nucleus	44.44	40.27
CDY48515	Canola	nucleus	45.19	39.87
CDY51831	Canola	vacuole	50.74	39.37
CDY10419	Canola	nucleus	77.41	39.14
CDY16939	Canola	nucleus	24.81	22.33
CDY38566	Canola	nucleus	24.44	20.56
CDY26997	Canola	nucleus	23.7	19.94
CDY02714	Canola	nucleus	26.3	19.24
CDX70747	Canola	nucleus	25.19	18.84
CDX85462	Canola	nucleus	25.93	18.77
CDX69388	Canola	nucleus	25.56	18.45
CDY26169	Canola	nucleus	21.11	18.15
CDX78737	Canola	nucleus	24.44	18.08
CDY19206	Canola	nucleus	21.11	15.75
CDX80051	Canola	nucleus	23.33	11.41
CDY61862	Canola	nucleus	24.44	11.26
CDX90004	Canola	nucleus	25.19	11.18
CDX80750	Canola	nucleus	23.33	11.11
CDY15205	Canola	nucleus	25.19	10.9
CDY41563	Canola	nucleus	22.96	8.24
CDY64825	Canola	cytosol, nucleus, plastid	0.37	0.64
CDX80052	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:A0A078CVG8	EnsemblPlants:CDX80840	ProteinID:CDX80840
ProteinID:CDX80840.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00134235001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF81	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0004EDB465	SEG:seg	:	:	:	:

Description

BnaC03g00940D

Coordinates

chrLK031823:+:446557..448845

Molecular Weight (calculated)

29613.5 Da

IEP (calculated)

5.226

GRAVY (calculated)

-0.561

Length

270 amino acids

Sequence
(BLAST)

001: MTSSLSSNPV VAEERPAETS TDLTDTTTEA PEKKVRKAYT ISKSRQSWTE GEHDKFLEAL QLFDRDWKKI EDFVGSKTVI QIRSHAQKYF LKVQKNGTFA
101: HVPPPRPKRK AAHPYPQKAS KNEISNVSGY GSWDDDTSAL LSIAVSEVIL PNDEIDTLFV IESNGSASAV SPSASGIGSS SRTLSGSEGL RPVNQAPSLK
201: GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNMS NPDFEPSSDA AEEGSEHLSS

Best Arabidopsis Sequence Match ( AT5G02840.1 )
(BLAST)

001: MTSTNPVVAE VIPAETSTDA TETTIATTEA GEAPEKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS

Arabidopsis Description

RVE4LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.