Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009562.1-P | Field mustard | nucleus | 50.0 | 85.58 |
| CDX70341 | Canola | nucleus | 44.57 | 83.51 |
| CDY11228 | Canola | nucleus | 41.57 | 80.43 |
| AT5G02840.1 | Thale cress | nucleus | 42.7 | 77.82 |
| CDX80840 | Canola | nucleus | 39.14 | 77.41 |
| CDY44719 | Canola | nucleus | 35.77 | 62.83 |
| CDY41598 | Canola | nucleus | 35.21 | 62.46 |
| CDY41299 | Canola | nucleus | 32.96 | 61.97 |
| VIT_08s0040g03220.t01 | Wine grape | nucleus | 31.27 | 59.01 |
| PGSC0003DMT400028711 | Potato | nucleus | 30.71 | 57.34 |
| KRH32383 | Soybean | plastid | 31.46 | 57.14 |
| Solyc10g084370.1.1 | Tomato | nucleus | 31.65 | 57.09 |
| KRH67632 | Soybean | nucleus | 31.46 | 56.19 |
| KRG95914 | Soybean | nucleus | 30.15 | 55.71 |
| KRH19794 | Soybean | nucleus | 31.27 | 55.48 |
| CDX90039 | Canola | plastid | 23.41 | 46.3 |
| CDY15171 | Canola | nucleus | 23.03 | 45.56 |
| CDY52837 | Canola | nucleus | 26.03 | 45.42 |
| CDY56155 | Canola | nucleus | 26.78 | 44.27 |
| CDY27841 | Canola | nucleus | 22.85 | 42.66 |
| CDY07188 | Canola | nucleus | 23.6 | 42.28 |
| CDY48515 | Canola | nucleus | 23.78 | 41.5 |
| CDY51831 | Canola | vacuole | 26.78 | 41.09 |
| CDY16939 | Canola | nucleus | 11.98 | 21.33 |
| CDY38566 | Canola | nucleus | 12.36 | 20.56 |
| CDY26997 | Canola | nucleus | 11.98 | 19.94 |
| CDY26169 | Canola | nucleus | 11.42 | 19.43 |
| CDX85462 | Canola | nucleus | 12.73 | 18.23 |
| CDX70747 | Canola | nucleus | 12.17 | 18.01 |
| CDY02714 | Canola | nucleus | 12.36 | 17.89 |
| CDX78737 | Canola | nucleus | 12.17 | 17.81 |
| CDX69388 | Canola | nucleus | 12.36 | 17.65 |
| CDY19206 | Canola | nucleus | 11.61 | 17.13 |
| CDX80051 | Canola | nucleus | 12.73 | 12.32 |
| CDX90004 | Canola | nucleus | 13.67 | 12.01 |
| CDY15205 | Canola | nucleus | 13.67 | 11.7 |
| CDY61862 | Canola | nucleus | 12.73 | 11.6 |
| CDX80750 | Canola | nucleus | 12.17 | 11.46 |
| CDY41563 | Canola | nucleus | 13.48 | 9.57 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 0.56 | 1.91 |
| CDX80052 | Canola | cytosol | 0.75 | 1.85 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.6.2 | GO:A0A078FBP1 | UniProt:A0A078FBP1 | EnsemblPlants:CDY10419 |
| ProteinID:CDY10419 | ProteinID:CDY10419.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00032337001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF81 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0004EDCC04 | SEG:seg | : | : | : | : |
Description
BnaCnng03200DBnaCnng03200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBP1]
Coordinates
chrLK032003:-:382440..386483
Molecular Weight (calculated)
59052.9 Da
IEP (calculated)
6.171
GRAVY (calculated)
-0.537
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSLSSNPV IAEERPTETS TDLTVNSLST EAPEKKVRKA YTITKSRESW TEGEHDKFLE ALQLFDRDWK KIEDFVGSKT VIQIRSHAQK YFLKVEKNGT
101: LAHVPPPRPK RKAAHPYPQK ASKNAQMSLH VSMSFPTQIN NVPGYTSWDD DTSALLNIAV SEVILPKDEL TTLCGGEGKH SHLHSFFFFA WPSSCSTCSS
201: RTVSDSKTAN QAPSMHGLPD FAEVYNFIGS VFDPDSKGRM KKLKEMDPIN FETVLLLMRN LTVNLSNPDF EPALLAGVVR DLWSRTKQVI YLLGELLAHN
301: NCLSAIKCCL RLLSEENITD QEGNMAVLVR TSSHQIGQSP ARLGLTGPGS PSVQNLTPSR HGHPTSSSSS QSHHQQQQIQ QPPPNLPPSS SQMRASQLYA
401: FADLDIGLPK TVENIEKKVE ALMEPPPPPP DLSAIQGLLP PNIAVPSGWK PGMPVELPKD WRLPAPPPGW KPGDPVVLPP ELVPAPRAQE QQQVRPPQGL
501: HRPPDVIHVR EVQLDIMEDD SSEYSSEESS DDEE
101: LAHVPPPRPK RKAAHPYPQK ASKNAQMSLH VSMSFPTQIN NVPGYTSWDD DTSALLNIAV SEVILPKDEL TTLCGGEGKH SHLHSFFFFA WPSSCSTCSS
201: RTVSDSKTAN QAPSMHGLPD FAEVYNFIGS VFDPDSKGRM KKLKEMDPIN FETVLLLMRN LTVNLSNPDF EPALLAGVVR DLWSRTKQVI YLLGELLAHN
301: NCLSAIKCCL RLLSEENITD QEGNMAVLVR TSSHQIGQSP ARLGLTGPGS PSVQNLTPSR HGHPTSSSSS QSHHQQQQIQ QPPPNLPPSS SQMRASQLYA
401: FADLDIGLPK TVENIEKKVE ALMEPPPPPP DLSAIQGLLP PNIAVPSGWK PGMPVELPKD WRLPAPPPGW KPGDPVVLPP ELVPAPRAQE QQQVRPPQGL
501: HRPPDVIHVR EVQLDIMEDD SSEYSSEESS DDEE
001: MTSTNPVVAE VIPAETSTDA TETTIATTEA GEAPEKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTRKV MNT
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTRKV MNT
Arabidopsis Description
RVE4LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.