Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025914.1-P | Field mustard | nucleus | 100.0 | 94.01 |
| CDY19206 | Canola | nucleus | 88.53 | 76.8 |
| AT3G10113.1 | Thale cress | nucleus | 73.89 | 69.05 |
| AT1G18330.2 | Thale cress | nucleus | 74.84 | 63.17 |
| CDY16939 | Canola | nucleus | 34.08 | 35.67 |
| CDX70747 | Canola | nucleus | 35.35 | 30.75 |
| CDY26997 | Canola | nucleus | 31.21 | 30.53 |
| CDY38566 | Canola | nucleus | 31.21 | 30.53 |
| CDY02714 | Canola | nucleus | 35.35 | 30.08 |
| CDX78737 | Canola | nucleus | 34.71 | 29.86 |
| KRH38938 | Soybean | nucleus | 43.95 | 29.61 |
| CDX85462 | Canola | nucleus | 34.71 | 29.22 |
| KRH09476 | Soybean | nucleus | 43.95 | 28.93 |
| CDX69388 | Canola | nucleus | 34.39 | 28.88 |
| Zm00001d014863_P002 | Maize | nucleus | 33.76 | 24.54 |
| KXG20957 | Sorghum | nucleus | 32.48 | 23.5 |
| Os06t0728700-01 | Rice | nucleus | 33.44 | 23.28 |
| CDY07188 | Canola | nucleus | 20.7 | 21.81 |
| TraesCS7B01G478200.1 | Wheat | nucleus | 33.44 | 21.74 |
| CDX90039 | Canola | plastid | 18.47 | 21.48 |
| CDX80840 | Canola | nucleus | 18.15 | 21.11 |
| TraesCS7D01G540700.3 | Wheat | nucleus | 32.17 | 20.91 |
| CDY41299 | Canola | nucleus | 18.79 | 20.77 |
| CDY15171 | Canola | nucleus | 17.83 | 20.74 |
| CDY52837 | Canola | nucleus | 20.06 | 20.59 |
| CDY48515 | Canola | nucleus | 20.06 | 20.59 |
| HORVU7Hr1G121210.4 | Barley | nucleus | 32.17 | 20.57 |
| CDY56155 | Canola | nucleus | 20.7 | 20.12 |
| CDY11228 | Canola | nucleus | 17.52 | 19.93 |
| TraesCS7A01G553800.1 | Wheat | nucleus | 32.17 | 19.84 |
| CDX70341 | Canola | nucleus | 17.52 | 19.3 |
| CDY51831 | Canola | vacuole | 20.7 | 18.68 |
| CDY41598 | Canola | nucleus | 17.83 | 18.6 |
| CDY44719 | Canola | nucleus | 17.83 | 18.42 |
| CDY27841 | Canola | nucleus | 16.56 | 18.18 |
| CDX80750 | Canola | nucleus | 29.62 | 16.4 |
| CDX80051 | Canola | nucleus | 28.66 | 16.3 |
| CDY61862 | Canola | nucleus | 30.25 | 16.21 |
| CDX90004 | Canola | nucleus | 30.89 | 15.95 |
| CDY15205 | Canola | nucleus | 31.21 | 15.71 |
| CDY41563 | Canola | nucleus | 28.66 | 11.97 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 5.73 | 11.46 |
| CDY10419 | Canola | nucleus | 19.43 | 11.42 |
| CDX80052 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078GLQ1 | UniProt:A0A078GLQ1 | EnsemblPlants:CDY26169 | ProteinID:CDY26169 |
| ProteinID:CDY26169.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00034826001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF86 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0004EDF879 | SEG:seg | : | : | : | : |
Description
BnaA06g12480DBnaA06g12480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLQ1]
Coordinates
chrLK032186:+:85566..87387
Molecular Weight (calculated)
34648.0 Da
IEP (calculated)
8.974
GRAVY (calculated)
-0.896
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPDRSEDG SSNVENGSCN SNEGTNHETS SCRIANAAKV RKPYTVSKQR EKWSEAEHER FLDAIELYGR AWRQIQEHIG TKTAVQIRSH AQKFFSKVAR
101: EADSGRDGSV KTVVIPPPRP KRKPTHPYPR KSPVPYAQSP SSNLEKGTKS PTSVLSPFDS EDQNDYATSK QSFKEDDAVT GSKPISSIML FGKIVLVTGE
201: SHKTSSSRED SGVDHKSTTG QDSRHVDTAL SLGVWDTSCT GSNVFGSVTE ISDNLEKSAE ARKRLTSLEK QEPCYRANGF RPYKRCLSER EVTSSLSLVA
301: SEEEGSRRRA RVCS
101: EADSGRDGSV KTVVIPPPRP KRKPTHPYPR KSPVPYAQSP SSNLEKGTKS PTSVLSPFDS EDQNDYATSK QSFKEDDAVT GSKPISSIML FGKIVLVTGE
201: SHKTSSSRED SGVDHKSTTG QDSRHVDTAL SLGVWDTSCT GSNVFGSVTE ISDNLEKSAE ARKRLTSLEK QEPCYRANGF RPYKRCLSER EVTSSLSLVA
301: SEEEGSRRRA RVCS
001: MVMMIIIYTE PEISLFPLQD RSEELSSNVE NGSCNSNEGI NPETSSHWIE NVVKVRKPYT VTKQREKWSE EEHDRFLEAI KLYGRGWRQI QEHIGTKTAV
101: QIRSHAQKFF SKMAQEADSR SEGSVKAIVI PPPRPKRKPA HPYPRKSPVP YTQSPPPNLS AMEKGTKSPT SVLSSFGSED QNNYTTSKQP FKDDSDIGST
201: PISSITLFGK IVLVAEESHK PSSYNDDDLK QMTCQENHYS GMLVDTNLSL GVWETFCTGS NAFGSVTEAS ENLEKSAEPI SSSWKRLSSL EKQGSCNPVN
301: ASGFRPYKRC LSEREVTSSL TLVASDEKKS QRARIC
101: QIRSHAQKFF SKMAQEADSR SEGSVKAIVI PPPRPKRKPA HPYPRKSPVP YTQSPPPNLS AMEKGTKSPT SVLSSFGSED QNNYTTSKQP FKDDSDIGST
201: PISSITLFGK IVLVAEESHK PSSYNDDDLK QMTCQENHYS GMLVDTNLSL GVWETFCTGS NAFGSVTEAS ENLEKSAEPI SSSWKRLSSL EKQGSCNPVN
301: ASGFRPYKRC LSEREVTSSL TLVASDEKKS QRARIC
Arabidopsis Description
RVE7LProtein REVEILLE 7-like [Source:UniProtKB/Swiss-Prot;Acc:F4J2J6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.