CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029111.1-P	Field mustard	nucleus	99.07	100.0
CDY51831	Canola	vacuole	96.9	89.94
CDY52837	Canola	nucleus	84.21	88.89
CDY27841	Canola	nucleus	76.47	86.36
AT5G52660.2	Thale cress	nucleus	85.45	83.38
KRH08856	Soybean	nucleus	59.44	63.79
Os02t0680700-01	Rice	nucleus	55.42	61.51
TraesCS6B01G266800.3	Wheat	nucleus	54.18	61.19
TraesCS6D01G239800.1	Wheat	nucleus	54.18	61.19
HORVU6Hr1G066000.1	Barley	nucleus	53.56	61.13
KRH35235	Soybean	nucleus	58.82	60.9
Zm00001d017609_P011	Maize	nucleus	51.39	60.81
KXG31009	Sorghum	nucleus	52.63	60.5
VIT_16s0050g01180.t01	Wine grape	nucleus	62.23	59.64
Solyc06g036300.2.1	Tomato	nucleus, plastid	55.42	59.47
GSMUA_Achr5P10280_001	Banana	nucleus	48.92	58.09
KRG91589	Soybean	nucleus	59.13	58.05
PGSC0003DMT400074344	Potato	plastid	50.15	56.06
GSMUA_Achr7P17560_001	Banana	nucleus	52.01	56.0
CDX90039	Canola	plastid	46.44	55.56
CDY15171	Canola	nucleus	46.13	55.19
KRH38371	Soybean	nucleus	58.2	53.26
HORVU0Hr1G031850.1	Barley	nucleus, plastid	53.56	51.95
CDY07188	Canola	nucleus	47.68	51.68
TraesCS6A01G258600.2	Wheat	nucleus	53.87	50.88
CDX80840	Canola	nucleus	42.41	50.74
Os06t0669700-01	Rice	nucleus	38.7	50.61
HORVU7Hr1G001830.3	Barley	nucleus	42.41	50.55
Os06t0105800-02	Rice	nucleus	46.44	50.34
CDY41299	Canola	nucleus	43.96	50.0
TraesCS7D01G014900.2	Wheat	nucleus	43.65	49.82
CDY48515	Canola	nucleus	46.75	49.35
TraesCS7A01G017600.1	Wheat	nucleus	42.41	49.28
CDY11228	Canola	nucleus	42.11	49.28
CDX70341	Canola	nucleus	43.34	49.12
CDY44719	Canola	nucleus	45.82	48.68
KXG20579	Sorghum	nucleus	51.08	48.67
CDY41598	Canola	nucleus	44.89	48.17
EER89043	Sorghum	nucleus	47.06	47.95
TraesCS7B01G372500.1	Wheat	nucleus	49.85	47.21
TraesCS7A01G470700.1	Wheat	nucleus	49.54	47.06
TraesCS4A01G474100.2	Wheat	nucleus	44.89	46.93
TraesCS7D01G458000.1	Wheat	nucleus	49.54	46.92
Zm00001d046974_P002	Maize	nucleus	47.99	45.99
Zm00001d036632_P002	Maize	nucleus	48.61	43.73
Zm00001d045581_P002	Maize	nucleus	42.72	43.67
GSMUA_Achr1P03720_001	Banana	nucleus	45.82	43.02
GSMUA_Achr1P06480_001	Banana	plastid	53.87	40.47
HORVU7Hr1G107550.3	Barley	nucleus	50.46	38.53
GSMUA_Achr1P15370_001	Banana	mitochondrion	13.93	36.89
CDY10419	Canola	nucleus	44.27	26.78
CDY16939	Canola	nucleus	22.29	24.0
CDY38566	Canola	nucleus	22.6	22.74
CDY26997	Canola	nucleus	21.98	22.12
CDY26169	Canola	nucleus	20.12	20.7
CDX69388	Canola	nucleus	23.22	20.05
CDY02714	Canola	nucleus	22.6	19.78
CDX85462	Canola	nucleus	22.6	19.57
CDX70747	Canola	nucleus	21.67	19.39
CDX78737	Canola	nucleus	21.67	19.18
CDY19206	Canola	nucleus	19.81	17.68
CDX80051	Canola	nucleus	23.84	13.95
CDX80750	Canola	nucleus	24.15	13.76
CDY61862	Canola	nucleus	24.46	13.48
CDX90004	Canola	nucleus	24.46	12.99
CDY15205	Canola	nucleus	24.46	12.66
CDY41563	Canola	nucleus	24.15	10.37
CDY64825	Canola	cytosol, nucleus, plastid	1.55	3.18
CDX80052	Canola	cytosol	0.31	0.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:A0A078IZZ2	UniProt:A0A078IZZ2	EnsemblPlants:CDY56155
ProteinID:CDY56155	ProteinID:CDY56155.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00017886001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0004EDE85A	SEG:seg	:	:	:	:

Description

BnaA03g12550DBnaA03g12550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZZ2]

Coordinates

chrLK033464:-:11122..13928

Molecular Weight (calculated)

35237.4 Da

IEP (calculated)

9.208

GRAVY (calculated)

-0.615

Length

323 amino acids

Sequence
(BLAST)

001: MVSRNPNPAD GSFLDPNAMT VVPAIGPFAA VAEAAETVSS GEDLSKKIRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQIRSHAQ
101: KYFLKVQKSG TGEHLPPPRP KRKAAHPYPQ KAHKNAQPQV PGSFKSAAPE PIDPSSYMFR PESSSMLMTS PTTPAAPAAP WTNNVQTISF TPLPKAGAGA
201: GANNNCSSSS ENTPKPRSNR DTTEQANPSH SLRVLPDFAQ VYSFIGSVFD PYASNHLQKL KKMDPIDVET VLLLMRNLSI NLSSPDFEDH RRLLSAYDIG
301: SEAATDPGGG SKTLNKDPPE IST

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.