Factsheet for HORVU6Hr1G066000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G239800.1	Wheat	nucleus	98.59	97.55
TraesCS6B01G266800.3	Wheat	nucleus	98.59	97.55
KXG31009	Sorghum	nucleus	85.16	85.77
HORVU0Hr1G031850.1	Barley	nucleus, plastid	100.0	84.98
Os02t0680700-01	Rice	nucleus	86.93	84.54
Zm00001d017609_P011	Maize	nucleus	79.86	82.78
TraesCS6A01G258600.2	Wheat	nucleus	96.82	80.12
GSMUA_Achr5P10280_001	Banana	nucleus	60.78	63.24
KRH08856	Soybean	nucleus	61.84	58.14
Solyc06g036300.2.1	Tomato	nucleus, plastid	60.42	56.81
KRH35235	Soybean	nucleus	62.54	56.73
CDY52837	Canola	nucleus	59.72	55.23
Bra003117.1-P	Field mustard	nucleus	59.36	54.9
Bra029111.1-P	Field mustard	nucleus	61.13	54.06
CDY56155	Canola	nucleus	61.13	53.56
KRG91589	Soybean	nucleus	62.19	53.5
VIT_16s0050g01180.t01	Wine grape	nucleus	63.6	53.41
PGSC0003DMT400074344	Potato	plastid	53.71	52.6
AT5G52660.2	Thale cress	nucleus	60.78	51.96
CDY27841	Canola	nucleus	51.94	51.4
HORVU7Hr1G001830.3	Barley	nucleus	48.76	50.92
CDY51831	Canola	vacuole	61.48	50.0
KRH38371	Soybean	nucleus	60.42	48.44
GSMUA_Achr1P03720_001	Banana	nucleus	56.18	46.22
HORVU7Hr1G107550.3	Barley	nucleus	58.66	39.24
HORVU3Hr1G025030.1	Barley	nucleus	34.98	23.08
HORVU2Hr1G104580.2	Barley	nucleus	25.44	15.58
HORVU7Hr1G121210.4	Barley	nucleus	25.44	14.66
HORVU6Hr1G066450.2	Barley	golgi, mitochondrion, plastid, vacuole	27.56	14.42
HORVU7Hr1G070870.2	Barley	nucleus	28.98	11.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	EMBL:AK354834	UniProt:F2CT82	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G066000	EnsemblPlants:HORVU6Hr1G066000.1	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002004D9C	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CT82]

Coordinates

chrchr6H:-:455535975..455539494

Molecular Weight (calculated)

31224.9 Da

IEP (calculated)

9.256

GRAVY (calculated)

-0.575

Length

283 amino acids

Sequence
(BLAST)

001: MVSTNPPPPP ALSDAAAGDD ASKKVRKPYT ITKSRESWTE QEHDKFLEAL QLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKVQKNGTSE HVPPPRPKRK
101: AAHPYPQKAS KNEPGYALKT DPSAMLRNSG MNVAVSSWTH NSIPPVVASS FMKEDLGAGS MGPNIFCSSS SEGPPRAWQS GETNDQINQV PSLRIMPDFA
201: QVYSFLGSVF DPNTKGHLQK LKEMNPIDVE TALLLMRNLS INLTSPDFED QRKLLSSYNS TSDGLELGSS RSSLLTDSAL SLF

Best Arabidopsis Sequence Match ( AT5G52660.1 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKGAGAN NNCSSSSENT PRPRSNRDAR DHGNVGHSLR VLPDFAQVYG FIGSVFDPYA SNHLQKLKKM DPIDVETVLL LMRNLSINLS SPDFEDHRRL
301: LSSYDIGSET ATDHGGVNKT LNKDPPEIST

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.