CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017609_P011	Maize	nucleus	90.75	93.41
HORVU6Hr1G066000.1	Barley	nucleus	85.77	85.16
Os02t0680700-01	Rice	nucleus	87.54	84.54
TraesCS6D01G239800.1	Wheat	nucleus	85.77	84.27
TraesCS6B01G266800.3	Wheat	nucleus	85.41	83.92
HORVU0Hr1G031850.1	Barley	nucleus, plastid	85.77	72.37
TraesCS6A01G258600.2	Wheat	nucleus	84.7	69.59
GSMUA_Achr5P10280_001	Banana	nucleus	61.21	63.24
KRH08856	Soybean	nucleus	60.85	56.81
Solyc06g036300.2.1	Tomato	nucleus, plastid	59.79	55.81
KRH35235	Soybean	nucleus	61.92	55.77
Bra003117.1-P	Field mustard	nucleus	59.07	54.25
CDY52837	Canola	nucleus	59.07	54.25
Bra029111.1-P	Field mustard	nucleus	60.5	53.12
VIT_16s0050g01180.t01	Wine grape	nucleus	63.35	52.82
CDY56155	Canola	nucleus	60.5	52.63
KRG91589	Soybean	nucleus	61.21	52.28
PGSC0003DMT400074344	Potato	plastid	53.02	51.56
KXG20579	Sorghum	nucleus	61.92	51.33
AT5G52660.2	Thale cress	nucleus	59.79	50.76
CDY27841	Canola	nucleus	51.25	50.35
CDY51831	Canola	vacuole	60.5	48.85
EER89043	Sorghum	nucleus	54.8	48.58
KRH38371	Soybean	nucleus	59.79	47.59
GSMUA_Achr1P03720_001	Banana	nucleus	57.65	47.09
OQU91224	Sorghum	mitochondrion, nucleus	24.56	36.51
OQU86282	Sorghum	nucleus	35.23	25.58
KXG20957	Sorghum	nucleus	27.4	17.74
EES05718	Sorghum	nucleus	28.47	17.58
EES12724	Sorghum	nucleus	26.33	16.7
EES13385	Sorghum	nucleus	30.25	11.38

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	UniProt:A0A194YRZ7	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KXG31009	ProteinID:KXG31009	ProteinID:KXG31009.1
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83
InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3004G281800	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0007F2124E
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:62405460..62410611

Molecular Weight (calculated)

30881.3 Da

IEP (calculated)

9.508

GRAVY (calculated)

-0.639

Length

281 amino acids

Sequence
(BLAST)

001: MVSASAPPPP LQSDAAGSGE DASKKVRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKNGTS EHVPPPRPKR
101: KAAHPYPQKA SKNEPNYGLK TDSSSIHRNS GMNVSVSSWA HSSIPQAVAS TMVKDLGAGT PGPNNFCSSS TEGPPRTWQP GETNDQINQV PSLRLMPDFA
201: EVYSFLGSVF DPSTSGHLQK LKEMNPIDVE TALLLMRNLS INLTSPDFED QRKLLSSYST SDGLQLGSSR SSALAMSTPF M

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.