CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044969_P001	Maize	cytosol	19.12	78.72
Zm00001d023295_P001	Maize	nucleus	19.12	77.89
Zm00001d039785_P001	Maize	nucleus	56.33	77.58
Zm00001d032105_P001	Maize	plastid	25.32	77.17
Zm00001d012051_P001	Maize	plastid	25.32	72.06
Zm00001d015487_P001	Maize	nucleus	14.47	71.79
Os01t0156000-01	Rice	nucleus	53.49	67.65
TraesCS3D01G134000.1	Wheat	nucleus	48.06	62.42
TraesCS3B01G151500.1	Wheat	nucleus	45.99	62.24
TraesCS3A01G308500.1	Wheat	nucleus	47.55	61.74
Zm00001d011020_P001	Maize	extracellular	30.49	58.13
OQU91224	Sorghum	mitochondrion, nucleus	24.03	49.21
HORVU3Hr1G025030.1	Barley	nucleus	51.68	46.62
GSMUA_Achr3P17770_001	Banana	nucleus	23.0	37.24
KXG31009	Sorghum	nucleus	25.58	35.23
EER89043	Sorghum	nucleus	25.06	30.6
KXG20579	Sorghum	nucleus	25.84	29.5
KXG20957	Sorghum	nucleus	16.28	14.52
EES05718	Sorghum	nucleus	17.05	14.51
EES12724	Sorghum	nucleus	14.73	12.87
EES13385	Sorghum	nucleus	17.05	8.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A1W0VVX4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	EnsemblPlants:OQU86282	ProteinID:OQU86282
ProteinID:OQU86282.1	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF85	InterPro:SANT/Myb
SMART:SM00717	EnsemblPlantsGene:SORBI_3003G064200	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0009DC87DC	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:5562196..5564939

Molecular Weight (calculated)

41914.9 Da

IEP (calculated)

6.412

GRAVY (calculated)

-0.265

Length

387 amino acids

Sequence
(BLAST)

001: MVTEQHELAS CPIPTPDGSC FSSSLPCSSR LYRIVYIPGR AFGDGDRCPF VPICCCCCCC WFVERDYSRG SSSSSSMDSN EMPGKKARKP YTITKPRERW
101: STEEHGRFVD ALLMFGRDWK KIEEHVGTKT TIQIRSHAQK YFLKVQKLGL AAGLPPMYPR RHFAMQQQEQ QQTTVAGSSA AAAAMPLLHG LQQQQPMCAP
201: VAMPGLSESD AVAHGSSIGW NSPGVLPAPS SEMQGLDWAA GPSASGTAPL MNTDAQSQIV PLAGGGRFIG APSLSSTSID WAGSGSSNAS EASAIGAVHD
301: EPIELPLSPE DLPFAQVYRF VGDMFDPNTP IPVETHLQKL KELDDITVKT ILLVLRNLEN NLSAPQFEPV RRLLSTYDPT RGVSGQL

Best Arabidopsis Sequence Match ( AT3G09600.7 )
(BLAST)

001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA

Arabidopsis Description

RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.