Factsheet for Zm00001d039785_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044969_P001	Maize	cytosol	29.54	88.3
Zm00001d032105_P001	Maize	plastid	38.79	85.83
Zm00001d023295_P001	Maize	nucleus	28.11	83.16
Zm00001d012051_P001	Maize	plastid	39.86	82.35
Zm00001d015487_P001	Maize	nucleus	20.28	73.08
Zm00001d011020_P001	Maize	extracellular	49.47	68.47
Os01t0156000-01	Rice	nucleus	65.84	60.46
TraesCS3A01G308500.1	Wheat	nucleus	60.85	57.38
TraesCS3D01G134000.1	Wheat	nucleus	60.85	57.38
OQU86282	Sorghum	nucleus	77.58	56.33
TraesCS3B01G151500.1	Wheat	nucleus	56.23	55.24
Zm00001d034947_P001	Maize	mitochondrion	29.54	49.4
Zm00001d034946_P001	Maize	mitochondrion	29.54	49.4
Zm00001d024547_P001	Maize	peroxisome	10.32	48.33
Zm00001d034945_P001	Maize	mitochondrion, nucleus	28.47	46.78
HORVU3Hr1G025030.1	Barley	nucleus	61.21	40.09
GSMUA_Achr3P17770_001	Banana	nucleus	30.25	35.56
Zm00001d017609_P011	Maize	nucleus	32.74	33.7
Zm00001d045581_P002	Maize	nucleus	32.03	28.48
Zm00001d046974_P002	Maize	nucleus	33.1	27.6
Zm00001d036632_P002	Maize	nucleus	32.03	25.07
Zm00001d051480_P001	Maize	nucleus	21.35	15.19
Zm00001d017642_P001	Maize	nucleus	23.13	13.92
Zm00001d014863_P002	Maize	nucleus	21.35	13.89
Zm00001d002545_P002	Maize	nucleus	20.28	12.95
Zm00001d026017_P001	Maize	nucleus	20.64	12.8
Zm00001d049543_P003	Maize	nucleus	22.42	8.75
Zm00001d024546_P001	Maize	nucleus	8.19	3.47

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A1D6ML54	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	ProteinID:ONM29941.1	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF85	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI000843A653	EnsemblPlantsGene:Zm00001d039785	EnsemblPlants:Zm00001d039785_P001	EnsemblPlants:Zm00001d039785_T001	SEG:seg

Description

Protein REVEILLE 8

Coordinates

chr3:+:14614435..14617037

Molecular Weight (calculated)

30236.2 Da

IEP (calculated)

7.215

GRAVY (calculated)

-0.270

Length

281 amino acids

Sequence
(BLAST)

001: MERDYSSTDG GGCEMPGKKA RKPYTITKPR ERWSTEEHAR FVDALLMFGR DWKKIEEHVG TKTTVQIRSH AQKYFLKVQK LGLAAGLPPM YPRRHFAIQQ
101: QSSVAGGSSA AAMPLLHGRQ PTCAPVGMPG MQGLDLEWAR ASVTGAAAAA FAAGGNRFIG APSLSGTSID WAGGGGGGGG SASEASAMGV VEDQQQIELP
201: LSPEDMPFAH VYRFVGDMFD ADAPVPVEAH LQKLKEMDDI TAKTVLLVLL NLENNLLAPQ FEPVRRLLST YDPTRALSGQ L

Best Arabidopsis Sequence Match ( AT3G09600.1 )
(BLAST)

001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA

Arabidopsis Description

RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.