Factsheet for Zm00001d002545_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12724	Sorghum	nucleus	81.59	81.04
Zm00001d026017_P001	Maize	nucleus	74.55	72.41
Zm00001d024547_P001	Maize	peroxisome	7.73	56.67
Os04t0583900-01	Rice	nucleus	58.41	55.51
TraesCS2B01G478700.1	Wheat	nucleus	49.32	52.29
TraesCS2A01G456600.1	Wheat	nucleus	49.09	51.67
TraesCS2D01G456900.1	Wheat	nucleus	48.18	50.96
HORVU2Hr1G104580.2	Barley	nucleus	46.82	44.59
Zm00001d051480_P001	Maize	nucleus	33.64	37.47
Zm00001d015487_P001	Maize	nucleus	6.36	35.9
Zm00001d017642_P001	Maize	nucleus	35.68	33.62
GSMUA_Achr8P13440_001	Banana	nucleus	26.36	30.61
Zm00001d023295_P001	Maize	nucleus	6.59	30.53
Zm00001d034945_P001	Maize	mitochondrion, nucleus	10.91	28.07
Zm00001d017609_P011	Maize	nucleus	16.36	26.37
Zm00001d034946_P001	Maize	mitochondrion	10.0	26.19
Zm00001d034947_P001	Maize	mitochondrion	10.0	26.19
Zm00001d014863_P002	Maize	nucleus	25.23	25.69
PGSC0003DMT400065850	Potato	nucleus	25.91	24.46
Solyc03g098320.2.1	Tomato	nucleus	25.45	24.45
GSMUA_Achr11P...	Banana	nucleus	24.32	22.38
GSMUA_AchrUn_...	Banana	nucleus	23.41	22.06
Zm00001d046974_P002	Maize	nucleus	16.82	21.96
Zm00001d045581_P002	Maize	nucleus	15.23	21.2
Zm00001d036632_P002	Maize	nucleus	17.05	20.89
Zm00001d039785_P001	Maize	nucleus	12.95	20.28
Zm00001d049543_P003	Maize	nucleus	27.73	16.94
Zm00001d024546_P001	Maize	nucleus	18.18	12.07
Zm00001d044969_P001	Maize	cytosol	1.36	6.38
Zm00001d011020_P001	Maize	extracellular	2.73	5.91
Zm00001d012051_P001	Maize	plastid	1.82	5.88
Zm00001d032105_P001	Maize	plastid	1.36	4.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A1D6E1V8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	ProteinID:ONM14649.1	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF45	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI000843BBC6	EnsemblPlantsGene:Zm00001d002545	EnsemblPlants:Zm00001d002545_P002	EnsemblPlants:Zm00001d002545_T002	SEG:seg

Description

MYB-related-transcription factor 20Protein REVEILLE 1

Coordinates

chr2:-:15128166..15131434

Molecular Weight (calculated)

47836.0 Da

IEP (calculated)

8.689

GRAVY (calculated)

-0.698

Length

440 amino acids

Sequence
(BLAST)

001: MARFQARSNQ RPAADHVGHR DFMDHLKNTL SSGDMDLPGG ARAPKARKPY TISKQREKWT EDEHKLFLEA LQQHGRAWRR IQEHIGSKTA VQIRSHAQKF
101: FSKVIRESSG DNSNNSVGAP PQLQIPPPRP KRRPTHPYPR KLGNSVGKDA SAAIKQLRKP QLQAQSLSEQ ENCSPKSVLT TAQMCSEALP AEGSGSPASS
201: VHMEDKCLTP NTSVGESSVQ VALSTDSNDA ACEIPEAEGP VLRLFGKRVV VSNLDQQPSS NTGSLQHAAD MELDDASAET PTSGTGKLSS HAAEEAETWC
301: PWLVGSTQQF LYYLPRGEVF SMHPGCQFLN YGNGSISYTA LDAQTVTSNK QRSRPWTESI ETSSSVPGTA QNSDPAESTK VNRGEDKVAV PVPGSRKCAG
401: AIPACRRGFV PYKKCTARSK VLQPVAPGEE ADRELTRLCL

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.