Factsheet for Solyc03g098320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065850	Potato	nucleus	91.48	89.91
GSMUA_Achr8P13440_001	Banana	nucleus	27.07	32.72
Solyc02g036370.2.1	Tomato	nucleus	31.88	31.47
TraesCS6B01G288500.1	Wheat	nucleus	28.6	29.24
TraesCS6D01G241900.1	Wheat	nucleus	28.6	29.18
Zm00001d051480_P001	Maize	nucleus	24.89	28.86
TraesCS6A01G261100.1	Wheat	nucleus	28.82	27.91
TraesCS2D01G456900.1	Wheat	nucleus	24.89	27.4
TraesCS2A01G456600.1	Wheat	nucleus	24.89	27.27
TraesCS2B01G478700.1	Wheat	nucleus	24.67	27.23
EES05718	Sorghum	nucleus	26.86	27.03
Os04t0583900-01	Rice	nucleus	26.86	26.57
EES12724	Sorghum	nucleus	25.11	25.96
Zm00001d017642_P001	Maize	nucleus	26.2	25.7
Solyc06g036300.2.1	Tomato	nucleus, plastid	16.81	25.58
Zm00001d002545_P002	Maize	nucleus	24.45	25.45
Os02t0685200-01	Rice	nucleus	26.86	25.05
Solyc10g084370.1.1	Tomato	nucleus	16.16	25.0
Zm00001d026017_P001	Maize	nucleus	24.45	24.72
HORVU2Hr1G104580.2	Barley	nucleus	24.89	24.68
Solyc01g095030.2.1	Tomato	nucleus	17.47	24.17
GSMUA_Achr11P...	Banana	nucleus	24.89	23.85
HORVU6Hr1G066450.2	Barley	golgi, mitochondrion, plastid, vacuole	28.17	23.84
GSMUA_AchrUn_...	Banana	nucleus	22.49	22.06
Solyc10g005080.2.1	Tomato	nucleus	26.64	16.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:K4BJP7	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF86	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc03g098320.2
EnsemblPlants:Solyc03g098320.2.1	TIGRFAMs:TIGR01557	UniParc:UPI000276893B	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:60665007..60669284

Molecular Weight (calculated)

49797.0 Da

IEP (calculated)

5.375

GRAVY (calculated)

-0.559

Length

458 amino acids

Sequence
(BLAST)

001: MVADAVNQVE GSQQGASSMI SSKLETVATQ GKAPTCLANE NVLKARKPYT ITKQREKWTE EEHQRFLEAL KLYGRAWRQI EEYVGSKTAI QIRSHAQKFF
101: AKVARDSGND GDESLNAIDI PPPRPKKKPL HPYPRKMADS SIANKAVSGQ PERSPSPNAS GRESCSPDSV LPAIGLGIAE YSVAEQQNSR FSPVSCTTDA
201: HTANIISTEN DDESMSSNSN NVDAIHVTLK PVAASISLIT NSEFMECNIV HMENSCNGEK LAVEPPSASI KLFGKTVFVP DANNLAPPAP YNTEKEKEIS
301: NEDVLHGFQA NQANSPFVLA MVPGNMIPPA SWLSQNMLEN NRESTAAFPA ATISWWSWYQ DLLYRSISSC GQTTVEAASH CQGLKDEEPQ REGSSTGSSI
401: GSASEVDDGN TSCETVESKC TTKIKGFVPY KRCLAERDGK SSGAVLEERE SQRVRVCS

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.