Factsheet for Os04t0583900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G456900.1	Wheat	nucleus	55.94	62.26
TraesCS2A01G456600.1	Wheat	nucleus	56.16	62.2
TraesCS2B01G478700.1	Wheat	nucleus	55.72	62.17
EES12724	Sorghum	nucleus	57.45	60.05
Zm00001d002545_P002	Maize	nucleus	55.51	58.41
Zm00001d026017_P001	Maize	nucleus	54.64	55.85
HORVU2Hr1G104580.2	Barley	nucleus	54.0	54.11
GSMUA_Achr8P13440_001	Banana	nucleus	28.29	34.56
Os02t0685200-01	Rice	nucleus	36.5	34.42
Os06t0728700-01	Rice	nucleus	26.78	27.49
Os02t0680700-01	Rice	nucleus	17.28	27.49
Solyc03g098320.2.1	Tomato	nucleus	26.57	26.86
PGSC0003DMT400065850	Potato	nucleus	25.92	25.75
Os05t0162800-00	Rice	mitochondrion, nucleus	11.45	25.73
Os06t0105800-02	Rice	nucleus	16.2	25.17
GSMUA_AchrUn_...	Banana	nucleus	25.05	24.84
GSMUA_Achr11P...	Banana	nucleus	25.05	24.27
Os06t0669700-01	Rice	nucleus	12.31	23.08
Os01t0156000-01	Rice	nucleus	13.61	20.59
Os08t0157600-01	Rice	nucleus	27.0	17.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EntrezGene:4336779	ProteinID:BAF15580.1	ProteinID:BAS90677.1	ProteinID:CAD41380.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
InterPro:Myb_dom_plants	EnsemblPlantsGene:Os04g0583900	EnsemblPlants:Os04t0583900-01	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802
PANTHER:PTHR12802:SF45	UniProt:Q7XUC8	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI00001B1A24	RefSeq:XP_015636284.1	SEG:seg	:	:	:

Description

LATE ELONGATED HYPOCOTYLSimilar to LHY protein. (Os04t0583900-01)

Coordinates

chr4:-:29500955..29503774

Molecular Weight (calculated)

51103.3 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.781

Length

463 amino acids

Sequence
(BLAST)

001: MARFQETKAR NDQGPVADHV GHQNLMENLT DPLDSSGMDM MDEARIPKAR KPYTITKQRE KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA
101: QKFFSKVIKE SSGDNCNSLG AASSIQIPPP RPKRKPVHPY PRNLGSTASK NVPALKQLEK PQLQVQSLYD QDNGSPTSVL TVPQIRADTL GSESGGSPTS
201: TIDIEERCPT PSIATAELAM ELPPTNDEEV KGNGDHEEVT CDRSGVPVLR LFGKRVMVND LHQMSAPDAG NLQTVADMEV DASAETPTSG TGKFSSHGAA
301: EANTWNPWLT NTQQFLYYLP NGQIFSVHSA LPCFTYHNEG VTCTQFSNPQ VVASDQQHQH QTSEAVDYKG IQREGSWTES NTSSSSVPET ATHNSETTES
401: YRNGNRNEDE MVPSPDSRKC VSPGSNCRRG FVPYKRCVAD SEALLKSQAP QEEADGEMTR LCL

Best Arabidopsis Sequence Match ( AT5G37260.1 )
(BLAST)

001: MAMQERCESL CSDELISSSD AFYLKTRKPY TITKQREKWT EAEHEKFVEA LKLYGRAWRR IEEHVGTKTA VQIRSHAQKF FTKVARDFGV SSESIEIPPP
101: RPKRKPMHPY PRKLVIPDAK EMVYAELTGS KLIQDEDNRS PTSVLSAHGS DGLGSIGSNS PNSSSAELSS HTEESLSLEA ETKQSLKLFG KTFVVGDYNS
201: SMSCDDSEDG KKKLYSETQS LQCSSSTSEN AETEVVVSEF KRSERSAFSQ LKSSVTEMNN MRGFMPYKKR VKVEENIDNV KLSYPLW

Arabidopsis Description

RVE2Protein REVEILLE 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K5X6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.