Factsheet for Os02t0685200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 24977183

gfp PMID: 24977183 doi

M Duan, P Huang, X Yuan, H Chen, J Huang, H Zhang

State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G241900.1	Wheat	nucleus	59.88	65.48
TraesCS6B01G288500.1	Wheat	nucleus	59.67	65.4
EES05718	Sorghum	nucleus	58.86	63.52
TraesCS6A01G261100.1	Wheat	nucleus	58.45	60.68
Zm00001d051480_P001	Maize	nucleus	46.64	57.97
Zm00001d017642_P001	Maize	nucleus	54.38	57.17
HORVU6Hr1G066450.2	Barley	golgi, mitochondrion, plastid, vacuole	58.45	53.05
Os04t0583900-01	Rice	nucleus	34.42	36.5
GSMUA_Achr8P13440_001	Banana	nucleus	26.88	34.83
Os06t0728700-01	Rice	nucleus	26.48	28.82
Solyc03g098320.2.1	Tomato	nucleus	25.05	26.86
Os05t0162800-00	Rice	mitochondrion, nucleus	11.2	26.7
PGSC0003DMT400065850	Potato	nucleus	25.05	26.39
GSMUA_Achr11P...	Banana	nucleus	24.85	25.52
GSMUA_AchrUn_...	Banana	nucleus	24.03	25.27
Os06t0105800-02	Rice	nucleus	15.27	25.17
Os02t0680700-01	Rice	nucleus	14.87	25.09
Os06t0669700-01	Rice	nucleus	11.2	22.27
Os01t0156000-01	Rice	nucleus	13.44	21.57
Os08t0157600-01	Rice	nucleus	26.07	17.8

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EntrezGene:4330349	ProteinID:BAD07567.1	ProteinID:BAD27878.1	ProteinID:BAF09679.1
ProteinID:BAS80328.1	ProteinID:EEE57594.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	EnsemblPlantsGene:Os02g0685200	EnsemblPlants:Os02t0685200-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF60	UniProt:Q6ZHD2	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0000236726	RefSeq:XP_015623484.1	SEG:seg	:

Description

MYB transcription factor OsMyb1R, Cold induced MYB 1MYB transcription factor, Transcriptional activator in mediating stress and rhythm responsivegene expression (Os02t0685200-01)

Coordinates

chr2:-:28041117..28044149

Molecular Weight (calculated)

51677.2 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.434

Length

491 amino acids

Sequence
(BLAST)

001: MEMACLPGNA MATDENGADD RAGGESTVDH LRSHMNYGDM DLSGEEHVPK ARKPYTITKQ REKWTDEEHR LFLEALQLHG RAWRRIQEHI GTKTAVQIRS
101: HAQKFFSKVV RESSGSNTGS GGASAAAAAA AIQIPPPRPK RKPAHPYPRK VDGAAKKHVP ALRQLEKPPL WMQSLSEQEE GSPTSVLTAA QIGTEALGGG
201: FSNNSSGSGS LAPSAAGTDE HVDGGGSPAS SVDREDGCLS PSIPTAELAM QAPNTKMSIA TTDAKEASSE ASVFRLFGKS VVVKDSDQLH LLNGSNIATS
301: GSVERATRNI LVPSFAAAPE GSSSNPWPSS MQQFLYFLPR SDGFAAQPVM PWLSYNGSLP CALFYPAAAA AANQQCHRDS EGVEFRVSQR EGSLTGSNTA
401: SSVVLGSSAA VPAAAAAAQN SDVAESRGQG NSREAAASPR LTKCESSASV TLLQRGFMPY KRCAAESELL RSEAAGGEEA VADGELTRLC L

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.