Factsheet for PGSC0003DMT400065850

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098320.2.1	Tomato	nucleus	89.91	91.48
PGSC0003DMT400029394	Potato	nucleus	10.52	72.06
GSMUA_Achr8P13440_001	Banana	nucleus	26.39	32.45
PGSC0003DMT400055263	Potato	nucleus	29.83	29.2
Zm00001d051480_P001	Maize	nucleus	24.68	29.11
TraesCS6B01G288500.1	Wheat	nucleus	27.68	28.79
TraesCS6D01G241900.1	Wheat	nucleus	27.68	28.73
TraesCS6A01G261100.1	Wheat	nucleus	27.9	27.48
EES05718	Sorghum	nucleus	26.61	27.25
TraesCS2D01G456900.1	Wheat	nucleus	23.61	26.44
EES12724	Sorghum	nucleus	25.11	26.41
TraesCS2A01G456600.1	Wheat	nucleus	23.61	26.32
TraesCS2B01G478700.1	Wheat	nucleus	23.39	26.27
Os04t0583900-01	Rice	nucleus	25.75	25.92
Zm00001d017642_P001	Maize	nucleus	25.97	25.91
Zm00001d002545_P002	Maize	nucleus	24.46	25.91
PGSC0003DMT400074344	Potato	plastid	15.88	25.61
PGSC0003DMT400028711	Potato	nucleus	15.67	25.52
Os02t0685200-01	Rice	nucleus	26.39	25.05
Zm00001d026017_P001	Maize	nucleus	23.61	24.28
PGSC0003DMT400000546	Potato	nucleus	16.52	24.21
HORVU2Hr1G104580.2	Barley	nucleus	23.61	23.81
HORVU6Hr1G066450.2	Barley	golgi, mitochondrion, plastid, vacuole	27.25	23.48
GSMUA_Achr11P...	Banana	nucleus	24.03	23.43
GSMUA_AchrUn_...	Banana	nucleus	22.1	22.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M1CEP7	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400025632
PGSC:PGSC0003DMG400025632	EnsemblPlants:PGSC0003DMT400065850	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF86	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000295683B	SEG:seg	:

Description

Myb-like DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025632]

Coordinates

chr3:+:44690344..44694465

Molecular Weight (calculated)

50759.0 Da

IEP (calculated)

5.540

GRAVY (calculated)

-0.575

Length

466 amino acids

Sequence
(BLAST)

001: MVADAVYAFF TIPQNQVEGA QQGASSMISS KLETVATQGK APTCLANENV LKARKPYTIT KQREKWTEEE HQRFLEALKL YGRAWRQIEE YVGSKTAIQI
101: RSHAQKFFAK IARDSGNDGD ESLNAIDIPP PRPKKKPLHP YPRKIADSSV ANKAVSGQPE RSPSPNASGR DSCSPDSVLP AIGLGASEYS AAEQQNSRFS
201: PVSCTTDAHT ANVISAENDD ESMSSNSNTV EEIHVALKPV AASTCPITNS EFMECDIVHM ENSCNGEKLA VEPPSASIKL FGKTVFVPDA NNLAPPALYN
301: TEKEIKISNE DVLHAFQANQ ANSPFILAMV PGNMIPPASW LSQNKLENNP ESTAAFPAAT ISWWSWYQDL IYRSISSCGQ TAMETAAHYQ RPKDEESQRE
401: GSSTGSSIGS ASEVDDGNRS SETVESKCTT KSKGFVPYKR CLAERDGKPA GAVLEERESQ RVRVCS

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.