Factsheet for PGSC0003DMT400074344

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g036300.2.1	Tomato	nucleus, plastid	88.24	84.72
PGSC0003DMT400029394	Potato	nucleus	13.49	57.35
HORVU6Hr1G066000.1	Barley	nucleus	52.6	53.71
KRH08856	Soybean	nucleus	55.36	53.16
KXG31009	Sorghum	nucleus	51.56	53.02
Os02t0680700-01	Rice	nucleus	53.29	52.92
TraesCS6D01G239800.1	Wheat	nucleus	52.25	52.8
TraesCS6B01G266800.3	Wheat	nucleus	52.25	52.8
Zm00001d017609_P011	Maize	nucleus	49.83	52.75
KRH35235	Soybean	nucleus	56.75	52.56
GSMUA_Achr5P10280_001	Banana	nucleus	49.13	52.21
VIT_16s0050g01180.t01	Wine grape	nucleus	60.55	51.93
GSMUA_Achr7P17560_001	Banana	nucleus	52.6	50.67
CDY52837	Canola	nucleus	53.63	50.65
Bra029111.1-P	Field mustard	nucleus	56.06	50.62
KRG91589	Soybean	nucleus	57.44	50.46
Bra003117.1-P	Field mustard	nucleus	53.29	50.33
CDY56155	Canola	nucleus	56.06	50.15
AT5G52660.2	Thale cress	nucleus	56.75	49.55
HORVU7Hr1G001830.3	Barley	nucleus	45.33	48.34
Os06t0669700-01	Rice	nucleus	41.18	48.18
CDY27841	Canola	nucleus	47.06	47.55
PGSC0003DMT400000546	Potato	nucleus	52.25	47.48
CDY51831	Canola	vacuole	56.4	46.84
TraesCS7A01G017600.1	Wheat	nucleus	44.98	46.76
TraesCS7D01G014900.2	Wheat	nucleus	45.33	46.29
Os06t0105800-02	Rice	nucleus	47.4	45.97
HORVU0Hr1G031850.1	Barley	nucleus, plastid	52.6	45.65
KRH38371	Soybean	nucleus	55.71	45.61
PGSC0003DMT400028711	Potato	nucleus	44.98	45.45
TraesCS6A01G258600.2	Wheat	nucleus	52.25	44.15
TraesCS7D01G458000.1	Wheat	nucleus	51.9	43.99
TraesCS7B01G372500.1	Wheat	nucleus	51.56	43.7
TraesCS7A01G470700.1	Wheat	nucleus	51.21	43.53
KXG20579	Sorghum	nucleus	50.52	43.07
TraesCS4A01G474100.2	Wheat	nucleus	44.98	42.07
EER89043	Sorghum	nucleus	46.02	41.96
Zm00001d046974_P002	Maize	nucleus	48.1	41.25
Zm00001d036632_P002	Maize	nucleus	49.13	39.55
Zm00001d045581_P002	Maize	nucleus	42.56	38.92
GSMUA_Achr1P03720_001	Banana	nucleus	45.67	38.37
GSMUA_Achr1P06480_001	Banana	plastid	54.67	36.74
HORVU7Hr1G107550.3	Barley	nucleus	51.21	34.99
GSMUA_Achr1P15370_001	Banana	mitochondrion	13.84	32.79
PGSC0003DMT400055263	Potato	nucleus	26.64	16.18
PGSC0003DMT400065850	Potato	nucleus	25.61	15.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1CTJ2	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400028896	PGSC:PGSC0003DMG400028896	EnsemblPlants:PGSC0003DMT400074344	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
TMHMM:TMhelix	UniParc:UPI0002955BE2	SEG:seg	:	:	:

Description

MYB transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028896]

Coordinates

chr6:-:37892101..37897406

Molecular Weight (calculated)

31966.4 Da

IEP (calculated)

10.224

GRAVY (calculated)

-0.375

Length

289 amino acids

Sequence
(BLAST)

001: MVMALPNLGS FSNPTATASA AATPSTSNPL SPSDDLSKKI RKPYTITKSR ESWTEPEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK
101: SGTTEHLPPP RPKRKAAHPY PQKATKSAPA VSPVPTSFQA SLPLPEPGIV KRPDSSLLPC NPATVMSVPS WTDNSVPPVS SSQMKKDNVR ETGQPVTNNR
201: CCSSNESTPR SKSTVRVMER TQVPSMRVLP DFAQVYNFIG SVFDPAVTGH LQKLKKMDRI DVETVYTLFC AVSLSCRLIL FLVLFAYTT

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.