Factsheet for Bra029111.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56155	Canola	nucleus	100.0	99.07
CDY51831	Canola	vacuole	97.5	89.66
Bra003117.1-P	Field mustard	nucleus	84.38	88.24
AT5G52660.2	Thale cress	nucleus	85.94	83.08
KRH08856	Soybean	nucleus	60.0	63.79
Os02t0680700-01	Rice	nucleus	55.94	61.51
TraesCS6D01G239800.1	Wheat	nucleus	54.69	61.19
TraesCS6B01G266800.3	Wheat	nucleus	54.69	61.19
HORVU6Hr1G066000.1	Barley	nucleus	54.06	61.13
KRH35235	Soybean	nucleus	59.38	60.9
Zm00001d017609_P011	Maize	nucleus	51.88	60.81
KXG31009	Sorghum	nucleus	53.12	60.5
VIT_16s0050g01180.t01	Wine grape	nucleus	62.81	59.64
Solyc06g036300.2.1	Tomato	nucleus, plastid	55.94	59.47
GSMUA_Achr5P10280_001	Banana	nucleus	49.38	58.09
KRG91589	Soybean	nucleus	59.69	58.05
PGSC0003DMT400074344	Potato	plastid	50.62	56.06
Bra033257.1-P	Field mustard	plastid	46.88	55.56
GSMUA_Achr7P17560_001	Banana	nucleus	51.88	55.33
KRH38371	Soybean	nucleus	58.75	53.26
Bra034074.1-P	Field mustard	nucleus	42.81	52.09
HORVU0Hr1G031850.1	Barley	nucleus, plastid	54.06	51.95
TraesCS6A01G258600.2	Wheat	nucleus	54.38	50.88
Os06t0669700-01	Rice	nucleus	39.06	50.61
HORVU7Hr1G001830.3	Barley	nucleus	42.81	50.55
Os06t0105800-02	Rice	nucleus	46.88	50.34
TraesCS7D01G014900.2	Wheat	nucleus	44.06	49.82
TraesCS7A01G017600.1	Wheat	nucleus	42.81	49.28
Bra029778.1-P	Field mustard	nucleus	46.25	48.68
KXG20579	Sorghum	nucleus	51.56	48.67
Bra005751.1-P	Field mustard	nucleus	42.5	48.06
EER89043	Sorghum	nucleus	47.5	47.95
TraesCS7B01G372500.1	Wheat	nucleus	50.31	47.21
TraesCS7A01G470700.1	Wheat	nucleus	50.0	47.06
TraesCS4A01G474100.2	Wheat	nucleus	45.31	46.93
TraesCS7D01G458000.1	Wheat	nucleus	50.0	46.92
Zm00001d046974_P002	Maize	nucleus	48.44	45.99
Bra009562.1-P	Field mustard	nucleus	44.38	45.51
Zm00001d036632_P002	Maize	nucleus	49.06	43.73
Zm00001d045581_P002	Maize	nucleus	43.12	43.67
Bra037365.1-P	Field mustard	nucleus	46.25	43.66
GSMUA_Achr1P03720_001	Banana	nucleus	46.25	43.02
GSMUA_Achr1P06480_001	Banana	plastid	54.38	40.47
HORVU7Hr1G107550.3	Barley	nucleus	50.94	38.53
GSMUA_Achr1P15370_001	Banana	mitochondrion	14.06	36.89
Bra024430.1-P	Field mustard	mitochondrion, nucleus	14.38	21.5
Bra039503.1-P	Field mustard	nucleus	22.19	21.32
Bra008563.1-P	Field mustard	nucleus	22.81	20.56
Bra006394.1-P	Field mustard	nucleus	22.19	19.51
Bra025914.1-P	Field mustard	nucleus	20.31	19.46
Bra023610.1-P	Field mustard	nucleus	22.5	19.41
Bra004503.1-P	Field mustard	nucleus	24.06	13.95
Bra030496.1-P	Field mustard	nucleus	24.69	13.48
Bra033291.1-P	Field mustard	nucleus	24.69	13.01
Bra004502.1-P	Field mustard	cytosol	0.31	0.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	EnsemblPlantsGene:Bra029111	EnsemblPlants:Bra029111.1	EnsemblPlants:Bra029111.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4EJZ4
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002540065	SEG:seg

Description

AT5G52660 (E=5e-113) | myb family transcription factor

Coordinates

chrA03:+:6410666..6412989

Molecular Weight (calculated)

35038.2 Da

IEP (calculated)

9.208

GRAVY (calculated)

-0.631

Length

320 amino acids

Sequence
(BLAST)

001: MVSRNPNPAD GSFLDPNAMT VVPAIGPFAA VAEAAETVSS GEDLSKKIRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAFIGSK TVIQIRSHAQ
101: KYFLKVQKSG TGEHLPPPRP KRKAAHPYPQ KAHKNAQPQV PGSFKSAAPE PIDPSSYMFR PESSSMLMTS PTTPAAPAAP WTNNVQTISF TPLPKGAGAN
201: NNCSSSSENT PKPRSNRDTT EQANPSHSLR VLPDFAQVYS FIGSVFDPYA SNHLQKLKKM DPIDVETVLL LMRNLSINLS SPDFEDHRRL LSAYDIGSEA
301: ATDPGGGSKT LNKDPPEIST

Best Arabidopsis Sequence Match ( AT5G52660.1 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKGAGAN NNCSSSSENT PRPRSNRDAR DHGNVGHSLR VLPDFAQVYG FIGSVFDPYA SNHLQKLKKM DPIDVETVLL LMRNLSINLS SPDFEDHRRL
301: LSSYDIGSET ATDHGGVNKT LNKDPPEIST

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.