Factsheet for Bra004503.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030496.1-P	Field mustard	nucleus	40.76	38.4
Bra033291.1-P	Field mustard	nucleus	41.3	37.56
Bra033257.1-P	Field mustard	plastid	13.95	28.52
Bra039503.1-P	Field mustard	nucleus	17.03	28.23
Bra008563.1-P	Field mustard	nucleus	17.93	27.89
Bra025914.1-P	Field mustard	nucleus	16.49	27.25
Bra023610.1-P	Field mustard	nucleus	18.3	27.22
Bra006394.1-P	Field mustard	nucleus	16.85	25.55
Bra003117.1-P	Field mustard	nucleus	13.77	24.84
Bra034074.1-P	Field mustard	nucleus	11.59	24.33
Bra024430.1-P	Field mustard	mitochondrion, nucleus	9.42	24.3
Bra029111.1-P	Field mustard	nucleus	13.95	24.06
Bra029778.1-P	Field mustard	nucleus	12.68	23.03
Bra005751.1-P	Field mustard	nucleus	11.59	22.61
Bra009562.1-P	Field mustard	nucleus	12.14	21.47
Bra037365.1-P	Field mustard	nucleus	12.68	20.65
Bra004502.1-P	Field mustard	cytosol	0.54	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	EnsemblPlantsGene:Bra004503	EnsemblPlants:Bra004503.1	EnsemblPlants:Bra004503.1-P
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006950	GO:GO:0007275	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009409	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733
GO:GO:0009737	GO:GO:0009739	GO:GO:0009751	GO:GO:0009753	GO:GO:0009791	GO:GO:0009987
GO:GO:0010243	GO:GO:0010468	GO:GO:0042754	GO:GO:0043496	GO:GO:0043565	GO:GO:0045892
GO:GO:0045893	GO:GO:0046686	GO:GO:0048574	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CJW9
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025472D5	SEG:seg

Description

AT2G46830 (E=2e-117) CCA1 | CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor

Coordinates

chrA05:-:471187..473554

Molecular Weight (calculated)

60226.3 Da

IEP (calculated)

6.471

GRAVY (calculated)

-0.860

Length

552 amino acids

Sequence
(BLAST)

001: METNSSGEDL VVKTRKPYTI TKQRERWTEE EHNRFLDALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VPVAQTLDIA IPPPRPKRKP
101: NNPYPRKTGT GSLPISKPGL NDGKESLGSG KVSLPETTNE DLQEDNCSDC LTHQHLSAAS NASTFLEFLP SREQGNNKES NSANYSEPQT YPRHIPLLVP
201: LGSSITTSLS HAPPSDPDEN SHHPHTVSGH HQSFPDHIMS TLLQTPALYT AASFASTFGG GGPQGNLAAM AAATVAAASA WWAANGMLPL CAPFSSGGLT
301: CHPPATAYGP SGEVDHTKTV DQEHSEASKA RSSLESEEAK NGSKPDCHHH PCAATETDAK GSDGARDRKQ VDRSSCGSNT PSSSDDVEAD ALVERQENGG
401: TTNEEVKEVD GDTTNNPQTS ESNARRSRIS SSNLADPWKS VSDEGRIAFR ALFAREVLPQ SFTYKREEGQ QQRYPMELDL NSAADDQEEN RNIAFLGASK
501: QQLLSRGRTG FKPYKRCSME AKESRVISNT NPIISVEQKD PKRIRLETQT ST

Best Arabidopsis Sequence Match ( AT2G46830.1 )
(BLAST)

001: METNSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFIEALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VAMGQALDIA IPPPRPKRKP
101: NNPYPRKTGS GTILMSKTGV NDGKESLGSE KVSHPEMANE DRQQSKPEEK TLQEDNCSDC FTHQYLSAAS SMNKSCIETS NASTFREFLP SREEGSQNNR
201: VRKESNSDLN AKSLENGNEQ GPQTYPMHIP VLVPLGSSIT SSLSHPPSEP DSHPHTVAGD YQSFPNHIMS TLLQTPALYT AATFASSFWP PDSSGGSPVP
301: GNSPPNLAAM AAATVAAASA WWAANGLLPL CAPLSSGGFT SHPPSTFGPS CDVEYTKAST LQHGSVQSRE QEHSEASKAR SSLDSEDVEN KSKPVCHEQP
401: SATPESDAKG SDGAGDRKQV DRSSCGSNTP SSSDDVEADA SERQEDGTNG EVKETNEDTN KPQTSESNAR RSRISSNITD PWKSVSDEGR IAFQALFSRE
501: VLPQSFTYRE EHREEEQQQQ EQRYPMALDL NFTAQLTPVD DQEEKRNTGF LGIGLDASKL MSRGRTGFKP YKRCSMEAKE SRILNNNPII HVEQKDPKRM
601: RLETQAST

Arabidopsis Description

CCA1Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.