Factsheet for Bra006394.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78737	Canola	nucleus	94.78	94.52
CDX70747	Canola	nucleus	86.26	86.98
Bra008563.1-P	Field mustard	nucleus	75.55	77.46
Bra023610.1-P	Field mustard	nucleus	77.2	75.74
AT5G17300.1	Thale cress	nucleus	80.49	75.71
Bra039503.1-P	Field mustard	nucleus	33.79	36.94
Bra025914.1-P	Field mustard	nucleus	30.49	33.23
PGSC0003DMT400055263	Potato	nucleus	43.13	32.98
Solyc02g036370.2.1	Tomato	nucleus	41.76	32.76
Bra024430.1-P	Field mustard	mitochondrion, nucleus	18.68	31.78
Bra034074.1-P	Field mustard	nucleus	18.41	25.48
Bra033257.1-P	Field mustard	plastid	18.13	24.44
Bra005751.1-P	Field mustard	nucleus	18.68	24.03
Bra003117.1-P	Field mustard	nucleus	19.23	22.88
Bra029778.1-P	Field mustard	nucleus	18.68	22.37
Bra029111.1-P	Field mustard	nucleus	19.51	22.19
Bra037365.1-P	Field mustard	nucleus	19.78	21.24
Bra009562.1-P	Field mustard	nucleus	17.86	20.83
Bra004503.1-P	Field mustard	nucleus	25.55	16.85
Bra033291.1-P	Field mustard	nucleus	27.47	16.47
Bra030496.1-P	Field mustard	nucleus	25.55	15.87
Bra004502.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EnsemblPlantsGene:Bra006394	EnsemblPlants:Bra006394.1	EnsemblPlants:Bra006394.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CQA5	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF60	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000253FD77	SEG:seg	:

Description

AT5G17300 (E=2e-122) | myb family transcription factor

Coordinates

chrA03:-:3330021..3331732

Molecular Weight (calculated)

40664.8 Da

IEP (calculated)

8.572

GRAVY (calculated)

-0.762

Length

364 amino acids

Sequence
(BLAST)

001: MKSPSLTVNA QGAKASLRSR VEETSDTQMQ FNDYAPKVRK PYIITKERER WTDEEHYKFV EALKLHGRAW KRIQGHVGTK TAVQIRSHAQ KFFSKVAREA
101: TGCNGSSVEP IVIPPPRPKR RPMHPYPRKL GNKGDHTERD NSSPTSVLSS VGSEALGSLD SHSPNRSLSP VSFASPQAAL ASTSNAPEEL ETLKLELFPR
201: ERLVNRESSI KEPTKQSLKL FGKIVLVSDS DMSSSLTTYC KSPTQPLPWK LSMVIDPQEE PLSCWIQVPP KQEEVENRCL DSEKAVQNEG SSTGSNTGSV
301: DDTGHTDKSS EPEAMVSQWE FTPSERSVFS ELTRVTSESN SRGFCPYKKR KMITEAEQDI RLCL

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.