Factsheet for Bra033291.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90004	Canola	nucleus	98.19	98.03
CDY15205	Canola	nucleus	96.71	94.07
PGSC0003DMT400029394	Potato	nucleus	8.9	79.41
AT1G01060.7	Thale cress	nucleus	73.15	68.84
Bra030496.1-P	Field mustard	nucleus	65.07	67.41
KRH47757	Soybean	nucleus	51.73	41.87
KRH06339	Soybean	nucleus	51.73	41.87
Bra004503.1-P	Field mustard	nucleus	37.56	41.3
KRH68974	Soybean	nucleus	50.41	40.91
VIT_15s0048g02410.t01	Wine grape	nucleus	51.4	40.47
KRG97259	Soybean	nucleus, plastid	52.06	38.58
Solyc10g005080.2.1	Tomato	nucleus	47.28	37.66
GSMUA_Achr1P06360_001	Banana	nucleus	41.35	34.57
Os08t0157600-01	Rice	nucleus	40.86	34.49
HORVU7Hr1G070870.2	Barley	nucleus	39.87	33.75
Zm00001d049543_P003	Maize	nucleus	39.7	33.47
EES13385	Sorghum	nucleus	40.2	32.66
TraesCS7B01G188000.1	Wheat	nucleus	38.55	31.62
TraesCS7A01G299400.3	Wheat	nucleus	38.72	31.5
TraesCS7D01G295400.1	Wheat	nucleus	38.55	31.33
Bra039503.1-P	Field mustard	nucleus	17.13	31.23
Bra008563.1-P	Field mustard	nucleus	17.63	30.14
Bra025914.1-P	Field mustard	nucleus	15.98	29.04
Zm00001d024546_P001	Maize	nucleus	31.63	28.96
Bra023610.1-P	Field mustard	nucleus	17.63	28.84
GSMUA_Achr10P...	Banana	nucleus	27.84	27.98
Bra006394.1-P	Field mustard	nucleus	16.47	27.47
Bra033257.1-P	Field mustard	plastid	11.86	26.67
Bra034074.1-P	Field mustard	nucleus	11.2	25.86
Bra003117.1-P	Field mustard	nucleus	12.69	25.16
Bra029111.1-P	Field mustard	nucleus	13.01	24.69
Bra029778.1-P	Field mustard	nucleus	12.36	24.67
Bra005751.1-P	Field mustard	nucleus	11.37	24.38
Bra009562.1-P	Field mustard	nucleus	11.7	22.76
Bra024430.1-P	Field mustard	mitochondrion, nucleus	7.74	21.96
Bra037365.1-P	Field mustard	nucleus	12.19	21.83
Bra004502.1-P	Field mustard	cytosol	0.66	1.85

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	EnsemblPlantsGene:Bra033291	EnsemblPlants:Bra033291.1	EnsemblPlants:Bra033291.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:M4EWV6	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802
PANTHER:PTHR12802:SF82	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002544F7E
SEG:seg	:	:	:	:	:

Description

AT1G01060 (E=3e-132) LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor

Coordinates

chrA10:-:4454880..4457684

Molecular Weight (calculated)

65555.0 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.773

Length

607 amino acids

Sequence
(BLAST)

001: MDTNTSGDEL LTKARKPYTI TKQRERWTED EHDRFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEAKG IPVCQALNIE IPPPRPKRKP
101: NTPYPRKPGN NGPSAKLVSS ASSSQCNQAF LDLEKVPISE ETSNGKENQD DNCSGVSTVN KCPLPKKVTQ PSLRKESADN GTSKKASNVN TQFHPPGMVS
201: QDLMFCPMGD RVHGHVNLPA TTTSCATTTT SQQAFPACPS QDSFLHFSST FPNLIISSLL QNPAAHAAAT FAASVWPYSN VGNSGGDSST TQMSSSPPSI
301: AAIAAATVAA ATAWWASHGL IPVCAPPAPV TCLPLPTFAV PTQATDKMDT VENDQEPLEK QNTALQDKNM ASKSPSSSSD DSEETGVTKL NNAGSKTNGD
401: KEEVVAAALH DPNASPKKKL VDRSSCGSNT PSGSDAETDA LDKMEKDNED VKEADPNQPS VIELSNRRSK IRDNNNNNNQ TTDSWKEVSQ GGRKAFQALF
501: ARQRLPQSFS PPQVAAENVN VNGKQSDTSM PMAPDLIKVQ DSCDADQESG VVMIGDGTGK SLKTRQSGFK PYKRCSMEAK ESQDGNANNE SDEKVCKRIR
601: LEGETST

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.