Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G299400.3 | Wheat | nucleus | 97.72 | 97.86 |
| TraesCS7B01G188000.1 | Wheat | nucleus | 96.79 | 97.7 |
| HORVU7Hr1G070870.2 | Barley | nucleus | 89.16 | 92.89 |
| PGSC0003DMT400029394 | Potato | nucleus | 7.23 | 79.41 |
| Os08t0157600-01 | Rice | nucleus | 70.15 | 72.88 |
| Zm00001d049543_P003 | Maize | nucleus | 66.0 | 68.47 |
| EES13385 | Sorghum | nucleus | 67.2 | 67.2 |
| CDY61862 | Canola | nucleus | 32.13 | 40.96 |
| Bra030496.1-P | Field mustard | nucleus | 31.99 | 40.78 |
| CDX80750 | Canola | nucleus | 30.92 | 40.74 |
| GSMUA_Achr1P06360_001 | Banana | nucleus | 37.48 | 38.57 |
| Bra033291.1-P | Field mustard | nucleus | 31.33 | 38.55 |
| CDX90004 | Canola | nucleus | 31.33 | 38.49 |
| AT2G46830.1 | Thale cress | nucleus | 31.06 | 38.16 |
| CDY15205 | Canola | nucleus | 31.59 | 37.82 |
| AT1G01060.7 | Thale cress | nucleus | 32.26 | 37.36 |
| CDX80051 | Canola | nucleus | 27.58 | 37.32 |
| KRH06339 | Soybean | nucleus | 37.08 | 36.93 |
| KRH47757 | Soybean | nucleus | 36.95 | 36.8 |
| VIT_15s0048g02410.t01 | Wine grape | nucleus | 37.35 | 36.19 |
| KRH68974 | Soybean | nucleus | 35.74 | 35.7 |
| Solyc10g005080.2.1 | Tomato | nucleus | 34.4 | 33.73 |
| GSMUA_Achr10P... | Banana | nucleus | 26.64 | 32.95 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 6.83 | 32.48 |
| KRG97259 | Soybean | nucleus, plastid | 35.21 | 32.11 |
| TraesCS6D01G241900.1 | Wheat | nucleus | 16.87 | 28.06 |
| TraesCS6D01G239800.1 | Wheat | nucleus | 10.71 | 27.97 |
| TraesCS7D01G014900.2 | Wheat | nucleus | 10.58 | 27.92 |
| TraesCS2D01G456900.1 | Wheat | nucleus | 15.39 | 27.64 |
| CDY41563 | Canola | nucleus | 27.44 | 27.26 |
| TraesCS1D01G111400.1 | Wheat | mitochondrion | 7.63 | 25.79 |
| TraesCS7D01G540700.3 | Wheat | nucleus | 15.53 | 24.02 |
| TraesCS7D01G458000.1 | Wheat | nucleus | 10.31 | 22.58 |
| TraesCS3D01G134000.1 | Wheat | nucleus | 8.84 | 22.15 |
| CDX80052 | Canola | cytosol | 0.13 | 0.46 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G295400.1 | EnsemblPlantsGene:TraesCS7D01G295400 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF43 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | TIGR:cd00167 | TIGRFAMs:TIGR01557 | MapMan:15.5.2.2 | MapMan:27.1.1 | : |
Description
No Description!
Coordinates
chr7D:-:370177295..370186393
Molecular Weight (calculated)
81613.9 Da
IEP (calculated)
6.637
GRAVY (calculated)
-0.759
Length
747 amino acids
Sequence
(BLAST)
(BLAST)
001: MEINSSGEET MIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP
101: NCPYPRKGCL SSETPTREVP KSSVSLSNSN AEMGSNGTLQ LTCIQKLQRK ELSENGSCSE VINIFREAPS ASFSSSNKSS SNHGVSGGIE PTKTENKDIA
201: TMERKSTSID VGKDVKDIND QEMERNNRVH ISSNYDRSHE DCLDNSMKHM QLKPNTAETT YTGQHAASAP LYQMNKTGAT GAPDPGTEGS HPDQTSDQVG
301: GANGSMDCIH PTLLVDPKMG SSSTAQPFPH NYAGFAPTMQ CHCNQDAYRS SLNMSSTFSN MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVGPNQEVFA
401: ENAQGRHIGS PPSMASVVAA TVAAASAWWA TQGLLPLFAP PMAFPFVPVP TASFPTADVQ RATENFPVDN APKECQVAQE QGQPEAMIVV ASSVSDESGK
501: GEVSPHTELN ISPADKVETT PPTGAETSDA FGNKKKQDRS SCGSNTPSSS DVEAEHVPEN QDQANDKTQQ ACCSNSSAGD MNHRRFRNIS STNDSWKEVS
601: EEGRMAFDKL FSRGKLPQSF SPPQAEGLKV VPRGEQDEAT TVTVDLNKSA AVMDHELDTL VGPRAATFPI ELSHLNMKSR RTGFKPYKRC SVEAKENRVP
701: ASDEVSEKHQ METDEKLKHL YSTVNQQSIL MDLASHPRPK HHMDQHK
101: NCPYPRKGCL SSETPTREVP KSSVSLSNSN AEMGSNGTLQ LTCIQKLQRK ELSENGSCSE VINIFREAPS ASFSSSNKSS SNHGVSGGIE PTKTENKDIA
201: TMERKSTSID VGKDVKDIND QEMERNNRVH ISSNYDRSHE DCLDNSMKHM QLKPNTAETT YTGQHAASAP LYQMNKTGAT GAPDPGTEGS HPDQTSDQVG
301: GANGSMDCIH PTLLVDPKMG SSSTAQPFPH NYAGFAPTMQ CHCNQDAYRS SLNMSSTFSN MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVGPNQEVFA
401: ENAQGRHIGS PPSMASVVAA TVAAASAWWA TQGLLPLFAP PMAFPFVPVP TASFPTADVQ RATENFPVDN APKECQVAQE QGQPEAMIVV ASSVSDESGK
501: GEVSPHTELN ISPADKVETT PPTGAETSDA FGNKKKQDRS SCGSNTPSSS DVEAEHVPEN QDQANDKTQQ ACCSNSSAGD MNHRRFRNIS STNDSWKEVS
601: EEGRMAFDKL FSRGKLPQSF SPPQAEGLKV VPRGEQDEAT TVTVDLNKSA AVMDHELDTL VGPRAATFPI ELSHLNMKSR RTGFKPYKRC SVEAKENRVP
701: ASDEVSEKHQ METDEKLKHL YSTVNQQSIL MDLASHPRPK HHMDQHK
001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
Arabidopsis Description
LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.