Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029394 | Potato | nucleus | 8.37 | 79.41 |
| CDY61862 | Canola | nucleus | 67.91 | 74.74 |
| Bra030496.1-P | Field mustard | nucleus | 67.75 | 74.57 |
| CDX80750 | Canola | nucleus | 65.27 | 74.25 |
| Bra033291.1-P | Field mustard | nucleus | 68.84 | 73.15 |
| CDX90004 | Canola | nucleus | 68.68 | 72.86 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 17.52 | 71.97 |
| CDY15205 | Canola | nucleus | 68.99 | 71.31 |
| KRH47757 | Soybean | nucleus | 52.56 | 45.2 |
| KRH06339 | Soybean | nucleus | 52.56 | 45.2 |
| KRH68974 | Soybean | nucleus | 50.54 | 43.58 |
| VIT_15s0048g02410.t01 | Wine grape | nucleus | 51.63 | 43.19 |
| KRG97259 | Soybean | nucleus, plastid | 52.4 | 41.27 |
| Solyc10g005080.2.1 | Tomato | nucleus | 48.68 | 41.21 |
| AT2G46830.1 | Thale cress | nucleus | 38.29 | 40.62 |
| AT5G37260.1 | Thale cress | nucleus | 16.43 | 36.93 |
| Os08t0157600-01 | Rice | nucleus | 40.47 | 36.3 |
| GSMUA_Achr1P06360_001 | Banana | nucleus | 40.47 | 35.95 |
| Zm00001d049543_P003 | Maize | nucleus | 38.6 | 34.58 |
| EES13385 | Sorghum | nucleus | 40.0 | 34.54 |
| HORVU7Hr1G070870.2 | Barley | nucleus | 38.29 | 34.45 |
| TraesCS7A01G299400.3 | Wheat | nucleus | 37.36 | 32.31 |
| TraesCS7D01G295400.1 | Wheat | nucleus | 37.36 | 32.26 |
| TraesCS7B01G188000.1 | Wheat | nucleus | 36.9 | 32.16 |
| Zm00001d024546_P001 | Maize | nucleus | 30.7 | 29.86 |
| AT3G10113.1 | Thale cress | nucleus | 15.5 | 29.76 |
| GSMUA_Achr10P... | Banana | nucleus | 27.6 | 29.47 |
| AT1G18330.2 | Thale cress | nucleus | 15.97 | 27.69 |
| AT5G17300.1 | Thale cress | nucleus | 16.12 | 26.87 |
| AT3G09600.7 | Thale cress | nucleus | 11.78 | 25.5 |
| AT5G52660.2 | Thale cress | nucleus | 13.02 | 25.38 |
| AT4G01280.2 | Thale cress | nucleus | 11.32 | 24.09 |
| AT5G02840.1 | Thale cress | nucleus | 10.85 | 23.89 |
| AT1G01520.3 | Thale cress | plastid | 10.54 | 23.69 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.1 | EntrezGene:839341 | UniProt:A0A178W761 | ProteinID:AAF26474.1 |
| ProteinID:AEE27223.1 | ProteinID:AEE27224.1 | ProteinID:AEE27225.1 | EMBL:AJ006404 | EMBL:AK316728 | EMBL:AK316829 |
| ProteinID:ANM58172.1 | ProteinID:ANM58174.1 | ArrayExpress:AT1G01060 | EnsemblPlantsGene:AT1G01060 | RefSeq:AT1G01060 | TAIR:AT1G01060 |
| RefSeq:AT1G01060-TAIR-G | EnsemblPlants:AT1G01060.7 | EMBL:AY519507 | Unigene:At.25466 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009733 |
| GO:GO:0009737 | GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0042752 | GO:GO:0042754 | GO:GO:0043433 | GO:GO:0044212 | GO:GO:0046686 | GO:GO:0048511 |
| GO:GO:0048574 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | Symbol:LHY | InterPro:Myb_dom | InterPro:Myb_dom_plants |
| RefSeq:NP_001030924.1 | RefSeq:NP_001320627.1 | RefSeq:NP_001320629.1 | RefSeq:NP_171614.1 | RefSeq:NP_849568.1 | ProteinID:OAP13996.1 |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF82 | UniProt:Q6R0H1 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0000162BD3 | SEG:seg | : |
Description
LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
Coordinates
chr1:-:33662..37871
Molecular Weight (calculated)
70441.6 Da
IEP (calculated)
6.025
GRAVY (calculated)
-0.746
Length
645 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK
201: NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
301: IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF
401: EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN
501: QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
601: KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK
201: NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
301: IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF
401: EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN
501: QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
601: KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.